| Authors: |
Michael Green, Pawel Krupinski, Pontus Melke, Patrik Sahlin, Henrik Jönsson
Computational Biology & Biological Physics, Lund University
|
| History: |
2008/01/28: beta version
2008/12/10: 1.0
2011/03/23: latest update
|
| Source: |
Available upon request (henrik at thep.lu.se).
|
| Installation: |
Download and extract Costanza.zip to the plugins folder,
or subfolder, restart ImageJ, and there will be a new "Costanza" directory in
the Plugins menu or submenu.
There is also a command line version (e.g. for batch jobs)
costanza.jar. If executed by java -jar
costanza.jar you will find out what files/parameters it requires.
|
| Requires: |
ImageJ 1.38 or newer.
|
| Description: |
Costanza is used to segment compartments (cells) in a stack and to extract
quantitative data for the extracted compartments, including intensities
from a second stack.
Usage:
Open the Costanza plugin and the image/stack you want to segment. Chose
parameters for the including processes, select input and output options and run
the plugin. More information available in
userguide.pdf.
|