BNF079, Systems Biology, 3p
NOTE! From 2007 this course does not longer exist, but is to be transformed into a new course within the second year of the new Master program in Bioinformatics.This course is part of the Master's level course program in Bioinformatics and Computational Biology given at the Faculty of Medicine.
Course Description:The aim of the course is to describe characteristics of known biological networks, and examples of dynamical models, from small networks involving only a few proteins and genes, to large-scale intercellular networks.
Course responsible person: Henrik Jönsson
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Exam fall 2005. Exam fall 2004. |
Course evaluation Fall 2005. Course evaluation Fall 2004. |
Fall 2006
Lecture notes:
- Introduction
- Network basics
- Network design
- Dynamics
- Robustness in developmental modules; a Drosophila example
Exercises:
- Cytoscape, visualization of networks
- Degree distribution of biological networks
- Finding motifs
- Numerical integration
- Designed oscillations
Fall 2005
Lecture notes:
- Introduction
- Network basics
- Network design
- Dynamics
- Robustness in developmental modules; a Drosophila example
Exercises:
- Cytoscape, visualization of networks
- Degree distribution of biological networks
- Finding motifs
- Molecular dynamics
- Designed oscillations
Fall 2004
- Introduction
- Network basics
- Network design I
- Dynamics
- Representation of networks
- Exercise, day 2 & 3 (components and degree distributions)
- Guide to the subroutines
- bnf079_sub1.pm (perl subroutines)
- Motif finding (exercise, day 4)
- Designed oscillations (computer exercise, 12/1.)
This page was created in
April, 2004.
Available at http://home.thep.lu.se/~henrik/bnf079/index.html.
Latest update: February 07, 2008.