Publications - Jari Häkkinen

[publications] [unpublished reports] [thesis]

Colored bullets denote citation counts (March 2011) in the SLAC Spires HEP database (for high energy physics papers) and the Science Citation Index (for others):
  • 1000 or more citations.
Some pdf files are links to the publisher and may have restricted access.
Compressed postscript files are preprints with unrestricted access.

Publications:


    According to the SLAC Spires HEP database (for high energy physics papers) and the Science Citation Index (for others), there are a total of 345 citations for 24 published papers found in the databases. The mean impact is 14 citations/paper (March 2011). The h-index is 10.

    K. Harbst, M. Lauss, H. Cirenajwis, C. Winter, J. Howlin, T. Törngren, A. Kvist, B. Nodin, E. Olsson, J. Häkkinen, K. Jirström, J. Staaf, L. Lundgren, H. Olsson, C. Ingvar, S.K. Gruvberger-Saal, L. H Saal, and G. Jönsson
    Molecular and Genetic Diversity in the Metastatic Process of Melanoma
    Journal of Pathology [Epub ahead of print]
    [journal]

    Á. Végvári, M. Rezeli, C. Sihlbom, J. Häkkinen, E. Carlsohn, J. Malm, H. Lilja, T. Laurell, and G. Marko-Varga
    Molecular microheterogeneity of prostate specific antigen in seminal fluid by mass spectrometry
    Clinical Biochemistry 45, 331-8 (2012)
    [journal]

    Á. Végvári, M. Rezeli, J. Häkkinen, C. Sihlbom, E. Carlsohn, J. Malm, H. Lilja, T. Laurell, and G. Marko-Varga
    Bioinformatic Strategies for Unambiguous Identification of Prostate Specific Antigen in Clinical Samples
    Journal of Proteomics 75, 202-10 (2011)
    [journal]

    M. Ringnér, E. Fredlund, J. Häkkinen, Å. Borg, and J. Staaf
    GOBO: Gene expression-based outcome for breast cancer online
    PLoS One 6, e17911 (2011)
    [journal]

    J. Häkkinen and F. Levander
    Laboratory Data and Sample Management for Proteomics
    Methods in Molecular Biology 696, Part 2, 79-92 (2011)
    [journal]

    J. Vallon-Christersson, N. Nordborg, M. Svensson, and J. Häkkinen
    BASE - 2nd generation software for microarray data management and analysis
    BMC Bioinformatics 10, 330 (2009)
    [journal]

    M. Eisenacher, L. Martens, T. Hardt, M. Kohl, H. Barsnes, K. Helsens, J. Häkkinen, F. Levander, R. Aebersold, J. Vandekerckhove, M.J. Dunn, F. Lisacek, J.A. Siepen, S.J. Hubbard, P.A. Binz, M. Blüggel, H. Thiele, J. Cottrell, H.E. Meyer, R. Apweiler, and C. Stephan
    Getting a grip on proteomics data - Proteomics Data Collection (ProDaC)
    Proteomics 9, 3928-33 (2009)
    [journal]

    J. Häkkinen, G. Vincic, O. Månsson, K. Wårell, and F. Levander
    The Proteios Software Environment - An extensible multi-user platform for management and analysis of proteomics data
    Journal of Proteome Research 8, 3037-43 (2009)
    [journal]

    M. Eisenacher, L. Martens, H. Barsnes, T. Hardt, M. Kohl, J. Häkkinen, R. Apweiler, H.E. Meyer, and C. Stephan
    Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece
    Proteomics 9, 3626-9 (2009)
    [journal]

    M. Eisenacher, M. Kohl, L. Martens, H. Barsnes, T. Hardt, F. Levander, J. Häkkinen, R. Apweiler, H.E. Meyer, and C. Stephan
    Proteomics data collection - 4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands
    Proteomics 9, 218-22 (2009)
    [journal]

    M. Eisenacher, T. Hardt, L. Martens, J. Häkkinen, R. Apweiler, M. Hamacher, H.E. Meyer, and C. Stephan
    Proteomics Data Collection - 3(rd) ProDaC Workshop April 22(nd) 2008, Toledo, Spain
    Proteomics 8, 4163-7 (2008)
    [journal]

    M. Eisenacher, T. Hardt, M. Hamacher, L. Martens, J. Häkkinen, F. Levander, R. Apweiler, H.E. Meyer, and C. Stephan
    Proteomics Data Collection - The 2nd ProDaC Workshop 5 october 2007, Seoul, Korea
    Proteomics 8, 1326-30 (2008)
    [journal]

    R. Alm, A. Ekefjärd, M. Krogh, J. Häkkinen, and C. Emanuelsson
    Proteomic variation is as large within as between strawberry varieties
    Journal of Proteome Research 6, 3011-20 (2007)
    [abstract]

    F. Potthast, B. Gerrits, J. Häkkinen, D. Rutishauser, C.H. Ahrens, B. Roschitzki, K. Baerenfaller, R. Munton, P. Walther, S.N. Lövenich, P. Gehrig, P. Seif, P.H. Seeberger, and R. Schlapbach
    The mass distance fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry
    Journal of Chromatography B854, 173-182 (2007)
    [abstract local]

    M. Eisenacher, T. Hardt, M. Hamacher, L. Martens, J. Häkkinen, F. Levander, R. Apweiler, H.E. Meyer, and C. Stephan
    Proteomics Data Collection - The 1st ProDaC Workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France
    Proteomics 7, 3034-7 (2007)
    [journal]

    F. Levander, M. Krogh, K. Wårell, P. Gärdén, P. James, and J. Häkkinen
    Automated reporting from gel-based proteomics experiments using the open source Proteios database application
    Proteomics 7, 668-674 (2007)
    [journal local abstract]

    P. Johansson and J. Häkkinen
    Improving missing value imputation of microarray data by using spot quality weights
    BMC Bioinformatics 7, 306 (2006)
    [journal local abstract]

    R. Alm, P. Johansson, K. Hjernø, C. Emanuelsson, M. Ringnér, and J. Häkkinen
    Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra
    Journal of Proteome Research 5, 785-792 (2006)
    [pdf abstract software]

    P. Gärdén, R. Alm, and J. Häkkinen
    Proteios: an open source proteomics initiative
    Bioinformatics 21, 2085-2087 (2005)
    [pdf abstract software]

    M. Ringnér, S. Veerla, S. Andersson, J. Staaf, and J. Häkkinen
    ACID: a database for microarray clone information
    Bioinformatics 20, 2305-2306 (2004)
    [pdf abstract software]

    T. Rögnvaldsson, J. Häkkinen, C. Lindberg, G. Marko-Varga, F. Potthast, and J. Samuelsson
    Improving Automatic Peptide Mass Fingerprint Protein Identification by Combining Multiple Peak Sets
    Journal of Chromatography B807, 209-15 (2004)
    [pdf abstract]

    J. Häkkinen, M. Lagerholm, C. Peterson, and B. Söderberg
    Local Routing Algorithms Based on Potts Neural Networks
    IEEE Transactions on Neural Networks 11, 970-977 (2000)
    [pdf ps.gz abstract]

    J. Häkkinen, M. Lagerholm, C. Peterson, and B. Söderberg
    A Potts Neuron Approach to Communication Routing
    Neural Computation 10, 1587-1599 (1998)
    [pdf ps.gz abstract]

    B. Andersson, G. Gustafson, J. Häkkinen, M. Ringnér, and P.J. Sutton
    Is there screwiness at the end of the QCD cascades?
    Journal of High Energy Physics 09, 014 (1998)
    [pdf ps.gz abstract]

    J. Häkkinen and M. Ringnér
    Bose-Einstein and colour interference in W-pair decays
    European Physical Journal C5, 275-281 (1998)
    [pdf ps.gz abstract]

    J. Häkkinen
    bb Fragmentation and Bπ Correlations
    Zeitschrift für Physik C75 35-40 (1997)
    [pdf ps.gz abstract]

    C. Friberg, G. Gustafson, and J. Häkkinen
    Colour Connections in e+e- annihilation
    Nuclear Physics B490, 289-305 (1997)
    [ps.gz abstract ]

    J. Häkkinen and H. Kharraziha
    Colour: A Computer Program for QCD Colour Factor Calculations
    Computer Physics Communications 100, 311-321 (1997)
    [ps.gz abstract software]

    G. Gustafson and J. Häkkinen
    Colour Interference and Confinement Effects in W pair Production
    Zeitschrift für Physik C64, 659-664 (1994)
    [ps.gz abstract]
    MC program (Link has expired, contact jari@thep.lu.se).

    G. Gustafson and J. Häkkinen
    Deuteron production in e+e--annihilation
    Zeitschrift für Physik C61, 683-688 (1994)
    [ps.gz abstract]

    G. Gustafson and J. Häkkinen
    Lambda-polarization in e+e--annihilation at the Z0-pole
    Physics Letter B303, 350-354 (1993)
    [ps.gz abstract]

Unpublished reports:

    P. Johansson, R. Alm, C. Emanuelsson, J. Häkkinen, and M. Ringnér
    SPECLUST: a web tool for clustering of mass spectra
    LU TP 07-14
    [pdf abstract software]

    J. Häkkinen
    SWEGENE Bioinformatics Survey - Report on Current Status and Suggestions for Future Directions
    August 2002
    [ps.gz pdf executive summary]

    Contributions to the QCD event generators report in the
    CERN report Physics at LEP2 (CERN 96-1)
    I.G. Knowles, T. Sjöstrand, et al.
    [ps.gz abstract]

Thesis:

    J. Häkkinen
    Properties of Hadronization in e+e- annihilation
    Ph.D. Thesis, Lund University, 1996
    ISBN 91-628-2114-8
    [ps.gz abstract]


This page was created in April 1996.
Latest update: January 8, 2014.

©1996-2014 jari@thep.lu.se