Publications - Jari Häkkinen

[refereed journals] [reports] [theses]

Colored bullets denote citation counts (March 2008) in the SLAC Spires HEP database (for high energy physics papers) and the Science Citation Index (for others):
  • 1000 or more citations.
    •
Some pdf files are links to the publisher and may have restricted access.
Compressed postscript files are preprints with unrestricted access.

Refereed papers:

    According to the SLAC Spires HEP database (for high energy physics papers) and the Science Citation Index (for others), there are a total of 266 citations for 18 published papers found in the databases. The mean impact is 15 citations/paper (March 2008).

    J. Vallon-Christersson, N. Nordborg, M. Svensson, and J. Häkkinen
    BASE - 2nd generation software for microarray data management and analysis
    BMC Bioinformatics 10, 330 (2009)
    [journal]

    M. Eisenacher, L. Martens, T. Hardt, M. Kohl, H. Barsnes, K. Helsens, J. Häkkinen, F. Levander, R. Aebersold, J. Vandekerckhove, M.J. Dunn, F. Lisacek, J.A. Siepen, S.J. Hubbard, P.A. Binz, M. Blüggel, H. Thiele, J. Cottrell, H.E. Meyer, R. Apweiler, and C. Stephan
    Getting a grip on proteomics data - Proteomics Data Collection (ProDaC)
    Proteomics 9, 3928-33 (2009)

    J. Häkkinen, G. Vincic, O. Månsson, K. Wårell, and F. Levander
    The Proteios Software Environment - An extensible multi-user platform for management and analysis of proteomics data
    Journal of Proteome Research 8, 3037-43 (2009)

    M. Eisenacher, L. Martens, H. Barsnes, T. Hardt, M. Kohl, J. Häkkinen, R. Apweiler, H.E. Meyer, and C. Stephan
    Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece
    Proteomics 9, 3626-9 (2009)

    M. Eisenacher, M. Kohl, L. Martens, H. Barsnes, T. Hardt, F. Levander, J. Häkkinen, R. Apweiler, H.E. Meyer, and C. Stephan
    Proteomics data collection - 4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands
    Proteomics 9, 218-22 (2009)

    M. Eisenacher, T. Hardt, L. Martens, J. Häkkinen, R. Apweiler, M. Hamacher, H.E. Meyer, and C. Stephan
    Proteomics Data Collection - 3(rd) ProDaC Workshop April 22(nd) 2008, Toledo, Spain
    Proteomics 8, 4163-7 (2008)

    M. Eisenacher, T. Hardt, M. Hamacher, L. Martens, J. Häkkinen, F. Levander, R. Apweiler, H.E. Meyer, and C. Stephan
    Proteomics Data Collection - The 2nd ProDaC Workshop 5 october 2007, Seoul, Korea
    Proteomics 8, 1326-30 (2008)

    R. Alm, A. Ekefjärd, M. Krogh, J. Häkkinen, and C. Emanuelsson
    Proteomic variation is as large within as between strawberry varieties
    Journal of Proteome Research 6, 3011-20 (2007)
    [abstract]

    F. Potthast, B. Gerrits, J. Häkkinen, D. Rutishauser, C.H. Ahrens, B. Roschitzki, K. Baerenfaller, R. Munton, P. Walther, S.N. Lövenich, P. Gehrig, P. Seif, P.H. Seeberger, and R. Schlapbach
    The mass distance fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry
    Journal of Chromatography B854, 173-182 (2007)
    [abstract local]

    M. Eisenacher, T. Hardt, M. Hamacher, L. Martens, J. Häkkinen, F. Levander, R. Apweiler, H.E. Meyer, and C. Stephan
    Proteomics Data Collection - The 1st ProDaC Workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France
    Proteomics 7, 3034-7 (2007)

    F. Levander, M. Krogh, K. Wårell, P. Gärdén, P. James, and J. Häkkinen
    Automated reporting from gel-based proteomics experiments using the open source Proteios database application
    Proteomics 7, 668-674 (2007)
    [journal local abstract]

    P. Johansson and J. Häkkinen
    Improving missing value imputation of microarray data by using spot quality weights
    BMC Bioinformatics 7, 306 (2006)
    [journal local abstract]

    R. Alm, P. Johansson, K. Hjernø, C. Emanuelsson, M. Ringnér, and J. Häkkinen
    Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra
    Journal of Proteome Research 5, 785-792 (2006)
    [pdf abstract software]

    P. Gärdén, R. Alm, and J. Häkkinen
    Proteios: an open source proteomics initiative
    Bioinformatics 21, 2085-2087 (2005)
    [pdf abstract software]

    M. Ringnér, S. Veerla, S. Andersson, J. Staaf, and J. Häkkinen
    ACID: a database for microarray clone information
    Bioinformatics 20, 2305-2306 (2004)
    [pdf abstract software]

    T. Rögnvaldsson, J. Häkkinen, C. Lindberg, G. Marko-Varga, F. Potthast, and J. Samuelsson
    Improving Automatic Peptide Mass Fingerprint Protein Identification by Combining Multiple Peak Sets
    Journal of Chromatography B807, 209-15 (2004)
    [pdf abstract]

    J. Häkkinen, M. Lagerholm, C. Peterson, and B. Söderberg
    Local Routing Algorithms Based on Potts Neural Networks
    IEEE Transactions on Neural Networks 11, 970-977 (2000)
    [pdf ps.gz abstract]

    J. Häkkinen, M. Lagerholm, C. Peterson, and B. Söderberg
    A Potts Neuron Approach to Communication Routing
    Neural Computation 10, 1587-1599 (1998)
    [pdf ps.gz abstract]

    B. Andersson, G. Gustafson, J. Häkkinen, M. Ringnér, and P.J. Sutton
    Is there screwiness at the end of the QCD cascades?
    Journal of High Energy Physics 09, 014 (1998)
    [pdf ps.gz abstract]

    J. Häkkinen and M. Ringnér
    Bose-Einstein and colour interference in W-pair decays
    European Physical Journal C5, 275-281 (1998)
    [pdf ps.gz abstract]

    J. Häkkinen
    bb Fragmentation and Bπ Correlations
    Zeitschrift für Physik C75 35-40 (1997)
    [pdf ps.gz abstract]

    C. Friberg, G. Gustafson, and J. Häkkinen
    Colour Connections in e+e- annihilation
    Nuclear Physics B490, 289-305 (1997)
    [ps.gz abstract ]

    J. Häkkinen and H. Kharraziha
    Colour: A Computer Program for QCD Colour Factor Calculations
    Computer Physics Communications 100, 311-321 (1997)
    [ps.gz abstract software]

    G. Gustafson and J. Häkkinen
    Colour Interference and Confinement Effects in W pair Production
    Zeitschrift für Physik C64, 659-664 (1994)
    [ps.gz abstract]
    MC program (Link has expired, contact jari@thep.lu.se).

    G. Gustafson and J. Häkkinen
    Deuteron production in e+e--annihilation
    Zeitschrift für Physik C61, 683-688 (1994)
    [ps.gz abstract]

    G. Gustafson and J. Häkkinen
    Lambda-polarization in e+e--annihilation at the Z0-pole
    Physics Letter B303, 350-354 (1993)
    [ps.gz abstract]

Reports:

    P. Johansson, R. Alm, C. Emanuelsson, J. Häkkinen, and M. Ringnér
    SPECLUST: a web tool for clustering of mass spectra
    LU TP 07-14
    [abstract software]

    J. Häkkinen
    SWEGENE Bioinformatics Survey - Report on Current Status and Suggestions for Future Directions
    August 2002
    [ps.gz pdf executive summary]

    Contributions to the QCD event generators report in the
    CERN report Physics at LEP2 (CERN 96-1)
    I.G. Knowles, T. Sjöstrand, et al.
    [ps.gz abstract]

Thesis:

    J. Häkkinen
    Properties of Hadronization in e+e- annihilation
    Ph.D. Thesis, Lund University, 1996
    ISBN 91-628-2114-8
    [ps.gz abstract]


This page was created in April 1996.
Latest update: February 8, 2010.

©1996-2010 jari@thep.lu.se