www/lims/arraydesigns/manage_plates.jsp

Code
Comments
Other
Rev Date Author Line
1976 13 Feb 06 nicklas 1 <%-- $Id$
1976 13 Feb 06 nicklas 2   ------------------------------------------------------------------
5425 23 Sep 10 nicklas 3   Copyright (C) 2006 Jari Häkkinen, Nicklas Nordborg
1976 13 Feb 06 nicklas 4
2304 22 May 06 jari 5   This file is part of BASE - BioArray Software Environment.
2304 22 May 06 jari 6   Available at http://base.thep.lu.se/
1976 13 Feb 06 nicklas 7
1976 13 Feb 06 nicklas 8   BASE is free software; you can redistribute it and/or
1976 13 Feb 06 nicklas 9   modify it under the terms of the GNU General Public License
4476 05 Sep 08 jari 10   as published by the Free Software Foundation; either version 3
1976 13 Feb 06 nicklas 11   of the License, or (at your option) any later version.
1976 13 Feb 06 nicklas 12
1976 13 Feb 06 nicklas 13   BASE is distributed in the hope that it will be useful,
1976 13 Feb 06 nicklas 14   but WITHOUT ANY WARRANTY; without even the implied warranty of
1976 13 Feb 06 nicklas 15   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
1976 13 Feb 06 nicklas 16   GNU General Public License for more details.
1976 13 Feb 06 nicklas 17
1976 13 Feb 06 nicklas 18   You should have received a copy of the GNU General Public License
4511 11 Sep 08 jari 19   along with BASE. If not, see <http://www.gnu.org/licenses/>.
1976 13 Feb 06 nicklas 20   ------------------------------------------------------------------
1976 13 Feb 06 nicklas 21
1976 13 Feb 06 nicklas 22
1976 13 Feb 06 nicklas 23   @author Nicklas
1976 13 Feb 06 nicklas 24   @version 2.0
1976 13 Feb 06 nicklas 25 --%>
5426 24 Sep 10 nicklas 26 <%@ page pageEncoding="UTF-8" session="false"
1976 13 Feb 06 nicklas 27   import="net.sf.basedb.core.SessionControl"
1976 13 Feb 06 nicklas 28   import="net.sf.basedb.core.DbControl"
1976 13 Feb 06 nicklas 29   import="net.sf.basedb.core.Item"
1976 13 Feb 06 nicklas 30   import="net.sf.basedb.core.ItemContext"
1976 13 Feb 06 nicklas 31   import="net.sf.basedb.core.SystemItems"
1976 13 Feb 06 nicklas 32   import="net.sf.basedb.core.Permission"
1976 13 Feb 06 nicklas 33   import="net.sf.basedb.core.Include"
1976 13 Feb 06 nicklas 34   import="net.sf.basedb.core.ArrayDesign"
1976 13 Feb 06 nicklas 35   import="net.sf.basedb.core.ArrayDesignPlate"
1976 13 Feb 06 nicklas 36   import="net.sf.basedb.core.Plate"
1976 13 Feb 06 nicklas 37   import="net.sf.basedb.core.ItemQuery"
1976 13 Feb 06 nicklas 38   import="net.sf.basedb.core.ItemResultList"
1976 13 Feb 06 nicklas 39   import="net.sf.basedb.core.PermissionDeniedException"
1976 13 Feb 06 nicklas 40   import="net.sf.basedb.core.BaseException"
1976 13 Feb 06 nicklas 41   import="net.sf.basedb.core.query.Orders"
1976 13 Feb 06 nicklas 42   import="net.sf.basedb.core.query.Hql"
1976 13 Feb 06 nicklas 43   import="net.sf.basedb.clients.web.Base"
1976 13 Feb 06 nicklas 44   import="net.sf.basedb.clients.web.util.HTML"
2753 20 Oct 06 nicklas 45   import="net.sf.basedb.util.Values"
6312 28 Aug 13 nicklas 46   import="net.sf.basedb.util.json.JsonUtil"
6312 28 Aug 13 nicklas 47   import="net.sf.basedb.util.json.JsonConverter"
6312 28 Aug 13 nicklas 48   import="org.json.simple.JSONObject"
1976 13 Feb 06 nicklas 49   import="java.util.List"
1976 13 Feb 06 nicklas 50   import="java.util.Set"
1976 13 Feb 06 nicklas 51   import="java.util.HashSet"
1976 13 Feb 06 nicklas 52   import="java.util.Date"
1976 13 Feb 06 nicklas 53 %>
1976 13 Feb 06 nicklas 54 <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
1976 13 Feb 06 nicklas 55 <%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
1976 13 Feb 06 nicklas 56 <%
1976 13 Feb 06 nicklas 57 final Item itemType = Item.ARRAYDESIGN;
1976 13 Feb 06 nicklas 58 final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
1976 13 Feb 06 nicklas 59 final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
1976 13 Feb 06 nicklas 60 final int itemId = cc.getId();
1976 13 Feb 06 nicklas 61 final String ID = sc.getId();
1976 13 Feb 06 nicklas 62 final float scale = Base.getScale(sc);
7954 12 May 21 nicklas 63 final DbControl dc = sc.newDbControl(":Manage plates");
1976 13 Feb 06 nicklas 64 try
1976 13 Feb 06 nicklas 65 {
1976 13 Feb 06 nicklas 66   ArrayDesign design = ArrayDesign.getById(dc, itemId);
6312 28 Aug 13 nicklas 67   design.checkPermission(Permission.WRITE);
1976 13 Feb 06 nicklas 68   cc.setObject("item", design);
1976 13 Feb 06 nicklas 69   String title = "Attach plate -- " + HTML.encodeTags(design.getName());
6312 28 Aug 13 nicklas 70   
6312 28 Aug 13 nicklas 71   // Load current plates
6312 28 Aug 13 nicklas 72   JSONObject jsonPlates = new JSONObject();
6312 28 Aug 13 nicklas 73   jsonPlates.put("itemType", "PLATE");
6312 28 Aug 13 nicklas 74   ItemQuery<ArrayDesignPlate> platesQuery = design.getArrayDesignPlates();
6312 28 Aug 13 nicklas 75   platesQuery.include(Include.MINE, Include.SHARED, Include.OTHERS, Include.IN_PROJECT);
6312 28 Aug 13 nicklas 76   platesQuery.order(Orders.asc(Hql.property("position")));
6312 28 Aug 13 nicklas 77   jsonPlates.put("items", JsonUtil.toArray(platesQuery.iterate(dc), new JsonConverter<ArrayDesignPlate>()
1976 13 Feb 06 nicklas 78   {
6312 28 Aug 13 nicklas 79     public Object convert(ArrayDesignPlate adp)
6312 28 Aug 13 nicklas 80     {
6312 28 Aug 13 nicklas 81       Plate plate = adp.getPlate();
6312 28 Aug 13 nicklas 82       JSONObject json = new JSONObject();
6312 28 Aug 13 nicklas 83       json.put("id", plate.getId());
6312 28 Aug 13 nicklas 84       json.put("name", plate.getName());
6312 28 Aug 13 nicklas 85       return json;
6312 28 Aug 13 nicklas 86     }
6312 28 Aug 13 nicklas 87   }));
1976 13 Feb 06 nicklas 88   %>
1976 13 Feb 06 nicklas 89   <base:page type="popup" title="<%=title%>">
6312 28 Aug 13 nicklas 90   <base:head scripts="linkitems-2.js,~manage_plates.js" />
6312 28 Aug 13 nicklas 91   <base:body>
5917 19 Dec 11 nicklas 92     <h1><%=title%> <base:help helpid="arraydesign.edit.plates" /></h1>
6162 10 Oct 12 nicklas 93     <form action="index.jsp?ID=<%=ID%>" method="post" name="design">
1976 13 Feb 06 nicklas 94     <input type="hidden" name="cmd" value="UpdatePlates">
1976 13 Feb 06 nicklas 95
5917 19 Dec 11 nicklas 96     <div class="content bottomborder">
5917 19 Dec 11 nicklas 97       <table class="fullform">
1976 13 Feb 06 nicklas 98       <tr>
5917 19 Dec 11 nicklas 99         <th>Array design</th>
1976 13 Feb 06 nicklas 100         <td><%=HTML.encodeTags(design.getName())%></td>
1976 13 Feb 06 nicklas 101       </tr>
5917 19 Dec 11 nicklas 102       <tr class="dynamic">
5917 19 Dec 11 nicklas 103         <th>Plates</th>
1976 13 Feb 06 nicklas 104         <td>
5917 19 Dec 11 nicklas 105           <div class="selectionlist">
1976 13 Feb 06 nicklas 106           <table>
5917 19 Dec 11 nicklas 107           <tr style="vertical-align: top;">
1976 13 Feb 06 nicklas 108           <td>
5917 19 Dec 11 nicklas 109             <base:buttongroup vertical="true">
5917 19 Dec 11 nicklas 110               <base:button
6312 28 Aug 13 nicklas 111                 id="moveUp"
6312 28 Aug 13 nicklas 112                 data-down="0"
5917 19 Dec 11 nicklas 113                 image="move_up.png" 
5917 19 Dec 11 nicklas 114                 tooltip="Move up" 
5917 19 Dec 11 nicklas 115                 subclass="square"
5917 19 Dec 11 nicklas 116               />
5917 19 Dec 11 nicklas 117               <base:button 
6312 28 Aug 13 nicklas 118                 id="moveDown"
6312 28 Aug 13 nicklas 119                 data-down="1"
5917 19 Dec 11 nicklas 120                 image="move_down.png" 
5917 19 Dec 11 nicklas 121                 tooltip="Move down" 
5917 19 Dec 11 nicklas 122                 subclass="square"
5917 19 Dec 11 nicklas 123               />
5917 19 Dec 11 nicklas 124             </base:buttongroup>
1976 13 Feb 06 nicklas 125           </td>
1976 13 Feb 06 nicklas 126           <td>
6312 28 Aug 13 nicklas 127             <select name="plates" id="plates" 
6312 28 Aug 13 nicklas 128               class="auto-init"
6312 28 Aug 13 nicklas 129               data-auto-init="link-container"
6312 28 Aug 13 nicklas 130               data-initial-items="[<%=HTML.encodeTags(jsonPlates.toJSONString()) %>]"
6312 28 Aug 13 nicklas 131               size="15" multiple>
1976 13 Feb 06 nicklas 132             </select>
1976 13 Feb 06 nicklas 133           </td>
1976 13 Feb 06 nicklas 134           <td>
5917 19 Dec 11 nicklas 135             <base:buttongroup vertical="true">
5917 19 Dec 11 nicklas 136               <base:button 
6312 28 Aug 13 nicklas 137                 subclass="leftaligned auto-init"
6312 28 Aug 13 nicklas 138                 data-auto-init="add-link"
6312 28 Aug 13 nicklas 139                 data-list-id="plates"
6312 28 Aug 13 nicklas 140                 data-item-type="PLATE"
5917 19 Dec 11 nicklas 141                 style="width: 12em;"
5917 19 Dec 11 nicklas 142                 title="Add plates..." 
5917 19 Dec 11 nicklas 143                 tooltip="Add plates to be used"
5917 19 Dec 11 nicklas 144               />
5917 19 Dec 11 nicklas 145               <base:button 
6312 28 Aug 13 nicklas 146                 subclass="leftaligned auto-init"
6312 28 Aug 13 nicklas 147                 data-auto-init="remove-link"
6312 28 Aug 13 nicklas 148                 data-list-id="plates"
5917 19 Dec 11 nicklas 149                 style="width: 12em;"
5917 19 Dec 11 nicklas 150                 title="Remove" 
5917 19 Dec 11 nicklas 151                 tooltip="Remove the selected plates"
5917 19 Dec 11 nicklas 152               />
5917 19 Dec 11 nicklas 153             </base:buttongroup>
1976 13 Feb 06 nicklas 154           </td>
1976 13 Feb 06 nicklas 155           </tr>
1976 13 Feb 06 nicklas 156           </table>
5917 19 Dec 11 nicklas 157           </div>
1976 13 Feb 06 nicklas 158         </td>
1976 13 Feb 06 nicklas 159       </tr>
1976 13 Feb 06 nicklas 160       </table>
5917 19 Dec 11 nicklas 161     </div>
5917 19 Dec 11 nicklas 162     </form>
1976 13 Feb 06 nicklas 163
5917 19 Dec 11 nicklas 164     <base:buttongroup subclass="dialogbuttons">
6312 28 Aug 13 nicklas 165       <base:button id="btnSave" title="Save" />
6312 28 Aug 13 nicklas 166       <base:button id="close" title="Cancel" />
5917 19 Dec 11 nicklas 167     </base:buttongroup>
1976 13 Feb 06 nicklas 168   </base:body>
1976 13 Feb 06 nicklas 169   </base:page>
1976 13 Feb 06 nicklas 170   <%
1976 13 Feb 06 nicklas 171 }
1976 13 Feb 06 nicklas 172 finally
1976 13 Feb 06 nicklas 173 {
1976 13 Feb 06 nicklas 174   if (dc != null) dc.close();
1976 13 Feb 06 nicklas 175 }
1976 13 Feb 06 nicklas 176 %>

Generated on Sat Oct  7 02:46:23 2023 (UTC) by svndigest 0.11.2pre (dev build 1672)