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www/views/rawbioassays/rawdata/list_rawdata.jsp

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Rev	Date	Author	Line
1765	13 Jan 06	nicklas	1	<%-- $Id$
1765	13 Jan 06	nicklas	2	------------------------------------------------------------------
5425	23 Sep 10	nicklas	3	Copyright (C) 2006 Johan Enell, Jari Häkkinen, Nicklas Nordborg
3675	16 Aug 07	jari	4	Copyright (C) 2007 Johan Enell, Nicklas Nordborg
1765	13 Jan 06	nicklas	5
2304	22 May 06	jari	6	This file is part of BASE - BioArray Software Environment.
2304	22 May 06	jari	7	Available at http://base.thep.lu.se/
1765	13 Jan 06	nicklas	8
1765	13 Jan 06	nicklas	9	BASE is free software; you can redistribute it and/or
1765	13 Jan 06	nicklas	10	modify it under the terms of the GNU General Public License
4476	05 Sep 08	jari	11	as published by the Free Software Foundation; either version 3
1765	13 Jan 06	nicklas	12	of the License, or (at your option) any later version.
1765	13 Jan 06	nicklas	13
1765	13 Jan 06	nicklas	14	BASE is distributed in the hope that it will be useful,
1765	13 Jan 06	nicklas	15	but WITHOUT ANY WARRANTY; without even the implied warranty of
1765	13 Jan 06	nicklas	16	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
1765	13 Jan 06	nicklas	17	GNU General Public License for more details.
1765	13 Jan 06	nicklas	18
1765	13 Jan 06	nicklas	19	You should have received a copy of the GNU General Public License
4511	11 Sep 08	jari	20	along with BASE. If not, see <http://www.gnu.org/licenses/>.
1765	13 Jan 06	nicklas	21	------------------------------------------------------------------
1765	13 Jan 06	nicklas	22
1765	13 Jan 06	nicklas	23	@author Nicklas
1765	13 Jan 06	nicklas	24	@version 2.0
1765	13 Jan 06	nicklas	25	--%>
5426	24 Sep 10	nicklas	26	<%@ page pageEncoding="UTF-8" session="false"
1765	13 Jan 06	nicklas	27	import="net.sf.basedb.core.SessionControl"
1765	13 Jan 06	nicklas	28	import="net.sf.basedb.core.DbControl"
1765	13 Jan 06	nicklas	29	import="net.sf.basedb.core.Item"
1765	13 Jan 06	nicklas	30	import="net.sf.basedb.core.ItemContext"
1765	13 Jan 06	nicklas	31	import="net.sf.basedb.core.RawBioAssay"
1933	07 Feb 06	nicklas	32	import="net.sf.basedb.core.RawDataType"
1765	13 Jan 06	nicklas	33	import="net.sf.basedb.core.RawDataProperty"
1943	08 Feb 06	nicklas	34	import="net.sf.basedb.core.ReporterType"
1943	08 Feb 06	nicklas	35	import="net.sf.basedb.core.Feature"
1943	08 Feb 06	nicklas	36	import="net.sf.basedb.core.Reporter"
1943	08 Feb 06	nicklas	37	import="net.sf.basedb.core.ArrayDesignBlock"
1943	08 Feb 06	nicklas	38	import="net.sf.basedb.core.Well"
1765	13 Jan 06	nicklas	39	import="net.sf.basedb.core.ItemQuery"
1765	13 Jan 06	nicklas	40	import="net.sf.basedb.core.DataQuery"
1765	13 Jan 06	nicklas	41	import="net.sf.basedb.core.DataResultIterator"
4866	31 Mar 09	martin	42	import="net.sf.basedb.core.ItemResultIterator"
1943	08 Feb 06	nicklas	43	import="net.sf.basedb.core.ItemResultList"
1765	13 Jan 06	nicklas	44	import="net.sf.basedb.core.Permission"
4866	31 Mar 09	martin	45	import="net.sf.basedb.core.PlateGeometry"
1765	13 Jan 06	nicklas	46	import="net.sf.basedb.core.PluginDefinition"
1943	08 Feb 06	nicklas	47	import="net.sf.basedb.core.ExtendedProperty"
1943	08 Feb 06	nicklas	48	import="net.sf.basedb.core.ExtendedProperties"
1765	13 Jan 06	nicklas	49	import="net.sf.basedb.core.PermissionDeniedException"
1943	08 Feb 06	nicklas	50	import="net.sf.basedb.core.data.RawData"
1943	08 Feb 06	nicklas	51	import="net.sf.basedb.core.data.ReporterData"
2314	23 May 06	nicklas	52	import="net.sf.basedb.core.data.FeatureData"
1765	13 Jan 06	nicklas	53	import="net.sf.basedb.core.query.Restrictions"
1765	13 Jan 06	nicklas	54	import="net.sf.basedb.core.query.Expressions"
1765	13 Jan 06	nicklas	55	import="net.sf.basedb.core.query.Orders"
1765	13 Jan 06	nicklas	56	import="net.sf.basedb.core.query.Hql"
1765	13 Jan 06	nicklas	57	import="net.sf.basedb.core.plugin.GuiContext"
1765	13 Jan 06	nicklas	58	import="net.sf.basedb.core.plugin.Plugin"
1765	13 Jan 06	nicklas	59	import="net.sf.basedb.clients.web.Base"
1765	13 Jan 06	nicklas	60	import="net.sf.basedb.clients.web.ModeInfo"
5064	19 Aug 09	nicklas	61	import="net.sf.basedb.clients.web.ChangeHistoryUtil"
1765	13 Jan 06	nicklas	62	import="net.sf.basedb.clients.web.util.HTML"
2753	20 Oct 06	nicklas	63	import="net.sf.basedb.util.Values"
1943	08 Feb 06	nicklas	64	import="net.sf.basedb.util.Enumeration"
2942	22 Nov 06	nicklas	65	import="net.sf.basedb.util.formatter.Formatter"
4860	27 Mar 09	martin	66	import="net.sf.basedb.util.formatter.WellCoordinateFormatter"
2942	22 Nov 06	nicklas	67	import="net.sf.basedb.clients.web.formatter.FormatterFactory"
4878	03 Apr 09	nicklas	68	import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
4878	03 Apr 09	nicklas	69	import="net.sf.basedb.clients.web.extensions.JspContext"
4878	03 Apr 09	nicklas	70	import="net.sf.basedb.clients.web.extensions.renderer.PrefixSuffixRenderer"
7604	25 Feb 19	nicklas	71	import="net.sf.basedb.clients.web.extensions.toolbar.ButtonAction"
4878	03 Apr 09	nicklas	72	import="net.sf.basedb.clients.web.extensions.toolbar.ToolbarUtil"
7604	25 Feb 19	nicklas	73	import="net.sf.basedb.clients.web.extensions.list.ListColumnAction"
6040	30 Mar 12	nicklas	74	import="net.sf.basedb.clients.web.extensions.list.ListColumnUtil"
4878	03 Apr 09	nicklas	75	import="net.sf.basedb.util.extensions.ExtensionsInvoker"
1765	13 Jan 06	nicklas	76	import="java.util.List"
1765	13 Jan 06	nicklas	77	import="java.util.Map"
1943	08 Feb 06	nicklas	78	import="java.util.Date"
1765	13 Jan 06	nicklas	79	%>
1765	13 Jan 06	nicklas	80	<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
1765	13 Jan 06	nicklas	81	<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %>
1855	27 Jan 06	nicklas	82	<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
1855	27 Jan 06	nicklas	83	<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
4878	03 Apr 09	nicklas	84	<%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %>
1765	13 Jan 06	nicklas	85	<%!
1765	13 Jan 06	nicklas	86	private static final Item itemType = Item.RAWDATA;
1765	13 Jan 06	nicklas	87	%>
1765	13 Jan 06	nicklas	88	<%
1765	13 Jan 06	nicklas	89	final int rawBioAssayId = Values.getInt(request.getParameter("rawbioassay_id"));
1765	13 Jan 06	nicklas	90	final SessionControl sc = Base.getExistingSessionControl(pageContext, Permission.DENIED, itemType);
1765	13 Jan 06	nicklas	91	final String ID = sc.getId();
1765	13 Jan 06	nicklas	92
1765	13 Jan 06	nicklas	93	final ModeInfo mode = ModeInfo.get(request.getParameter("mode"));
1765	13 Jan 06	nicklas	94	final String callback = request.getParameter("callback");
1765	13 Jan 06	nicklas	95	final String title = mode.generateTitle("raw data", "raw data");
7954	12 May 21	nicklas	96	final DbControl dc = sc.newDbControl(":List "+itemType);
1765	13 Jan 06	nicklas	97	DataResultIterator<RawData> rawData = null;
1765	13 Jan 06	nicklas	98	try
1765	13 Jan 06	nicklas	99	{
7014	12 Nov 15	nicklas	100	final boolean readReporter = !sc.hasPermission(Permission.DENIED, Item.REPORTER);
1765	13 Jan 06	nicklas	101	RawBioAssay rawBioAssay = RawBioAssay.getById(dc, rawBioAssayId);
1933	07 Feb 06	nicklas	102	RawDataType rawDataType = rawBioAssay.getRawDataType();
2017	17 Feb 06	nicklas	103	final String subContext = rawDataType.getId();
6040	30 Mar 12	nicklas	104	final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.LIST, subContext);
1765	13 Jan 06	nicklas	105
2017	17 Feb 06	nicklas	106	final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, subContext, null, null);
7914	23 Feb 21	nicklas	107	JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, guiContext, rawBioAssay);
1933	07 Feb 06	nicklas	108
1765	13 Jan 06	nicklas	109	final DataQuery<RawData> query = rawBioAssay.getRawData();
4093	18 Jan 08	enell	110	query.join(Hql.leftJoin(null, "reporter", "r", null, true));
4093	18 Jan 08	enell	111	query.join(Hql.leftJoin(null, "feature", "f", null, true));
7914	23 Feb 21	nicklas	112	cc.configureQuery(dc, query, jspContext, true);
1765	13 Jan 06	nicklas	113	if (!"row".equals(cc.getSortProperty())) query.order(Orders.asc(Hql.property("row")));
1765	13 Jan 06	nicklas	114	if (!"column".equals(cc.getSortProperty())) query.order(Orders.asc(Hql.property("column")));
1765	13 Jan 06	nicklas	115
1765	13 Jan 06	nicklas	116	Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext);
1943	08 Feb 06	nicklas	117	final ItemQuery<ReporterType> typeQuery = ReporterType.getQuery();
1943	08 Feb 06	nicklas	118	typeQuery.order(Orders.asc(Hql.property("name")));
1943	08 Feb 06	nicklas	119	typeQuery.setCacheResult(true);
2747	19 Oct 06	enell	120	List<ExtendedProperty> reporterProperties = ExtendedProperties.getProperties("ReporterData");
1943	08 Feb 06	nicklas	121
4866	31 Mar 09	martin	122	WellCoordinateFormatter rowFormatter = new WellCoordinateFormatter(true);
4866	31 Mar 09	martin	123	WellCoordinateFormatter columnFormatter = new WellCoordinateFormatter(false);
4866	31 Mar 09	martin	124
4866	31 Mar 09	martin	125	Enumeration<String, String> plateRows = new Enumeration<String, String>();
4866	31 Mar 09	martin	126	final ItemQuery<PlateGeometry> geometryQuery = PlateGeometry.getQuery();
4866	31 Mar 09	martin	127	geometryQuery.order(Orders.desc(Hql.property("rows")));
4866	31 Mar 09	martin	128	ItemResultIterator<PlateGeometry> result = geometryQuery.iterate(dc);
4866	31 Mar 09	martin	129	int maxRows = result.next().getRows();
6497	26 Jun 14	nicklas	130	for (int row = 0; row < maxRows && row < 256; row++)
4866	31 Mar 09	martin	131	{
4866	31 Mar 09	martin	132	plateRows.add(Integer.toString(row), rowFormatter.format(row));
4866	31 Mar 09	martin	133	}
4866	31 Mar 09	martin	134
6497	26 Jun 14	nicklas	135	Enumeration<String, String> plateColumns = new Enumeration<String, String>();
6497	26 Jun 14	nicklas	136	final ItemQuery<PlateGeometry> columnsGeometryQuery = PlateGeometry.getQuery();
6497	26 Jun 14	nicklas	137	columnsGeometryQuery.order(Orders.desc(Hql.property("columns")));
6497	26 Jun 14	nicklas	138	ItemResultIterator<PlateGeometry> columnsResult = columnsGeometryQuery.iterate(dc);
6497	26 Jun 14	nicklas	139	int maxColumns = columnsResult.next().getColumns();
6497	26 Jun 14	nicklas	140	for (int column = 0; column < maxColumns && column < 256; column++)
6497	26 Jun 14	nicklas	141	{
6497	26 Jun 14	nicklas	142	plateColumns.add(Integer.toString(column), columnFormatter.format(column));
6497	26 Jun 14	nicklas	143	}
6497	26 Jun 14	nicklas	144
2029	20 Feb 06	nicklas	145	try
2029	20 Feb 06	nicklas	146	{
2029	20 Feb 06	nicklas	147	rawData = query.iterate(dc);
2029	20 Feb 06	nicklas	148	}
2029	20 Feb 06	nicklas	149	catch (Throwable t)
2029	20 Feb 06	nicklas	150	{
2029	20 Feb 06	nicklas	151	cc.setMessage(t.getMessage());
5026	28 Jul 09	nicklas	152	t.printStackTrace();
2029	20 Feb 06	nicklas	153	}
1765	13 Jan 06	nicklas	154	int numListed = 0;
2942	22 Nov 06	nicklas	155	final boolean writeReporterPermission = sc.hasPermission(Permission.WRITE, Item.REPORTER);
3453	05 Jun 07	nicklas	156	Formatter<Date> dateFormatter = FormatterFactory.getDateTimeFormatter(sc);
7604	25 Feb 19	nicklas	157	ExtensionsInvoker<ButtonAction> invoker = ToolbarUtil.useExtensions(jspContext);
7604	25 Feb 19	nicklas	158	ExtensionsInvoker<ListColumnAction<RawData,?>> columnsInvoker = ListColumnUtil.useExtensions(jspContext);
1765	13 Jan 06	nicklas	159	%>
6311	23 Aug 13	nicklas	160	<base:page title="<%=title%>" id="list-page">
6311	23 Aug 13	nicklas	161	<base:head scripts="table.js,tabcontrol-2.js,~rawdata.js" styles="table.css,toolbar.css,headertabcontrol.css,path.css">
4878	03 Apr 09	nicklas	162	<ext:scripts context="<%=jspContext%>" />
4878	03 Apr 09	nicklas	163	<ext:stylesheets context="<%=jspContext%>" />
1765	13 Jan 06	nicklas	164	</base:head>
1765	13 Jan 06	nicklas	165
1765	13 Jan 06	nicklas	166	<base:body>
5952	10 Feb 12	nicklas	167	<p:path><p:pathelement
5952	10 Feb 12	nicklas	168	title="Raw bioassays" href="<%="../index.jsp?ID="+ID%>"
5952	10 Feb 12	nicklas	169	/><p:pathelement title="<%=HTML.encodeTags(rawBioAssay.getName())%>"
5952	10 Feb 12	nicklas	170	/></p:path>
5952	10 Feb 12	nicklas	171
5952	10 Feb 12	nicklas	172	<t:tabcontrol
5952	10 Feb 12	nicklas	173	id="main"
5952	10 Feb 12	nicklas	174	subclass="mastertabcontrol content"
6311	23 Aug 13	nicklas	175	active="rawdata">
1855	27 Jan 06	nicklas	176	<t:tab id="properties" title="Properties" />
2875	08 Nov 06	nicklas	177	<t:tab id="annotations" title="Annotations & parameters"
2875	08 Nov 06	nicklas	178	tooltip="View annotation values and protocol parameters" />
1855	27 Jan 06	nicklas	179
1855	27 Jan 06	nicklas	180	<t:tab id="rawdata" title="Raw data">
1855	27 Jan 06	nicklas	181
1765	13 Jan 06	nicklas	182	<tbl:table
5952	10 Feb 12	nicklas	183	id="rawdata"
1765	13 Jan 06	nicklas	184	columns="<%=cc.getSetting("columns")%>"
1765	13 Jan 06	nicklas	185	sortby="<%=cc.getSortProperty()%>"
1765	13 Jan 06	nicklas	186	direction="<%=cc.getSortDirection()%>"
1765	13 Jan 06	nicklas	187	action="index.jsp"
1765	13 Jan 06	nicklas	188	sc="<%=sc%>"
1765	13 Jan 06	nicklas	189	item="<%=itemType%>"
2017	17 Feb 06	nicklas	190	subcontext="<%=subContext%>"
6698	30 Jan 15	nicklas	191	filterrows="<%=cc.getFilterRows()%>"
5952	10 Feb 12	nicklas	192	subclass="fulltable"
7982	14 Jun 21	nicklas	193	stickyheaders="<%=cc.getSetting("columns.sticky", "position")%>"
1765	13 Jan 06	nicklas	194	>
1765	13 Jan 06	nicklas	195	<tbl:hidden
1765	13 Jan 06	nicklas	196	name="mode"
1765	13 Jan 06	nicklas	197	value="<%=mode.getName()%>"
1765	13 Jan 06	nicklas	198	/>
1765	13 Jan 06	nicklas	199	<tbl:hidden
1765	13 Jan 06	nicklas	200	name="rawbioassay_id"
1765	13 Jan 06	nicklas	201	value="<%=String.valueOf(rawBioAssayId)%>"
1765	13 Jan 06	nicklas	202	/>
1765	13 Jan 06	nicklas	203	<tbl:hidden
1765	13 Jan 06	nicklas	204	name="callback"
1765	13 Jan 06	nicklas	205	value="<%=callback%>"
1765	13 Jan 06	nicklas	206	skip="<%=callback == null%>"
1765	13 Jan 06	nicklas	207	/>
1765	13 Jan 06	nicklas	208	<tbl:columndef
1765	13 Jan 06	nicklas	209	id="position"
4387	11 Aug 08	nicklas	210	clazz="uniquecol"
1765	13 Jan 06	nicklas	211	property="position"
1765	13 Jan 06	nicklas	212	datatype="int"
1943	08 Feb 06	nicklas	213	title="[Raw] Position"
1765	13 Jan 06	nicklas	214	sortable="true"
1765	13 Jan 06	nicklas	215	filterable="true"
1765	13 Jan 06	nicklas	216	exportable="true"
1765	13 Jan 06	nicklas	217	show="always"
1765	13 Jan 06	nicklas	218	/>
1765	13 Jan 06	nicklas	219	<tbl:columndef
4332	12 Jun 08	martin	220	id="id"
4387	11 Aug 08	nicklas	221	clazz="uniquecol"
4332	12 Jun 08	martin	222	property="id"
4332	12 Jun 08	martin	223	datatype="int"
4332	12 Jun 08	martin	224	title="ID"
4332	12 Jun 08	martin	225	sortable="true"
4332	12 Jun 08	martin	226	filterable="true"
4332	12 Jun 08	martin	227	exportable="true"
4332	12 Jun 08	martin	228	/>
4332	12 Jun 08	martin	229	<tbl:columndef
1765	13 Jan 06	nicklas	230	id="block"
1765	13 Jan 06	nicklas	231	property="block"
1765	13 Jan 06	nicklas	232	datatype="int"
1943	08 Feb 06	nicklas	233	title="[Raw] Block"
1765	13 Jan 06	nicklas	234	sortable="true"
1765	13 Jan 06	nicklas	235	filterable="true"
1765	13 Jan 06	nicklas	236	exportable="true"
1765	13 Jan 06	nicklas	237	/>
1765	13 Jan 06	nicklas	238	<tbl:columndef
1765	13 Jan 06	nicklas	239	id="metaGridX"
1765	13 Jan 06	nicklas	240	property="metaGridX"
1765	13 Jan 06	nicklas	241	datatype="int"
1943	08 Feb 06	nicklas	242	title="[Raw] Meta grid X"
1765	13 Jan 06	nicklas	243	sortable="true"
1765	13 Jan 06	nicklas	244	filterable="true"
1765	13 Jan 06	nicklas	245	exportable="true"
1765	13 Jan 06	nicklas	246	/>
1765	13 Jan 06	nicklas	247	<tbl:columndef
1765	13 Jan 06	nicklas	248	id="metaGridY"
1765	13 Jan 06	nicklas	249	property="metaGridY"
1765	13 Jan 06	nicklas	250	datatype="int"
1943	08 Feb 06	nicklas	251	title="[Raw] Meta grid Y"
1765	13 Jan 06	nicklas	252	sortable="true"
1765	13 Jan 06	nicklas	253	filterable="true"
1765	13 Jan 06	nicklas	254	exportable="true"
1765	13 Jan 06	nicklas	255	/>
1765	13 Jan 06	nicklas	256	<tbl:columndef
1765	13 Jan 06	nicklas	257	id="row"
1765	13 Jan 06	nicklas	258	property="row"
1765	13 Jan 06	nicklas	259	datatype="int"
1943	08 Feb 06	nicklas	260	title="[Raw] Row"
1765	13 Jan 06	nicklas	261	sortable="true"
1765	13 Jan 06	nicklas	262	filterable="true"
4866	31 Mar 09	martin	263	exportable="true"
1765	13 Jan 06	nicklas	264	/>
1765	13 Jan 06	nicklas	265	<tbl:columndef
1765	13 Jan 06	nicklas	266	id="column"
1765	13 Jan 06	nicklas	267	property="column"
1765	13 Jan 06	nicklas	268	datatype="int"
1943	08 Feb 06	nicklas	269	title="[Raw] Column"
1765	13 Jan 06	nicklas	270	sortable="true"
1765	13 Jan 06	nicklas	271	filterable="true"
1765	13 Jan 06	nicklas	272	exportable="true"
1765	13 Jan 06	nicklas	273	/>
1765	13 Jan 06	nicklas	274	<tbl:columndef
1765	13 Jan 06	nicklas	275	id="x"
1765	13 Jan 06	nicklas	276	property="x"
1765	13 Jan 06	nicklas	277	datatype="int"
1943	08 Feb 06	nicklas	278	title="[Raw] X"
1765	13 Jan 06	nicklas	279	sortable="true"
1765	13 Jan 06	nicklas	280	filterable="true"
1765	13 Jan 06	nicklas	281	exportable="true"
1765	13 Jan 06	nicklas	282	/>
1765	13 Jan 06	nicklas	283	<tbl:columndef
1943	08 Feb 06	nicklas	284	id="y"
1765	13 Jan 06	nicklas	285	property="y"
1765	13 Jan 06	nicklas	286	datatype="int"
1943	08 Feb 06	nicklas	287	title="[Raw] Y"
1765	13 Jan 06	nicklas	288	sortable="true"
1765	13 Jan 06	nicklas	289	filterable="true"
1765	13 Jan 06	nicklas	290	exportable="true"
1765	13 Jan 06	nicklas	291	/>
1765	13 Jan 06	nicklas	292	<%
1765	13 Jan 06	nicklas	293	for (RawDataProperty rdp : rawBioAssay.getRawDataType().getProperties())
1765	13 Jan 06	nicklas	294	{
1765	13 Jan 06	nicklas	295	%>
1765	13 Jan 06	nicklas	296	<tbl:columndef
1765	13 Jan 06	nicklas	297	id="<%="raw."+rdp.getName()%>"
1765	13 Jan 06	nicklas	298	property="<%=rdp.getName()%>"
1765	13 Jan 06	nicklas	299	datatype="<%=rdp.getType().getStringValue()%>"
1943	08 Feb 06	nicklas	300	title="<%="[Raw] "+HTML.encodeTags(rdp.getTitle())%>"
1765	13 Jan 06	nicklas	301	sortable="true"
1765	13 Jan 06	nicklas	302	filterable="true"
1765	13 Jan 06	nicklas	303	exportable="true"
2942	22 Nov 06	nicklas	304	formatter="<%=FormatterFactory.getExtendedPropertyFormatter(sc, rdp)%>"
1765	13 Jan 06	nicklas	305	/>
1765	13 Jan 06	nicklas	306	<%
1765	13 Jan 06	nicklas	307	}
1765	13 Jan 06	nicklas	308	%>
4302	19 May 08	nicklas	309	<tbl:columndef
4302	19 May 08	nicklas	310	id="reporterList"
5425	23 Sep 10	nicklas	311	property="$r.£reporterListScores"
4302	19 May 08	nicklas	312	datatype="int"
4302	19 May 08	nicklas	313	title="[Rep] Reporter list"
4302	19 May 08	nicklas	314	filterable="true"
4302	19 May 08	nicklas	315	enumeration="<%=Base.getReporterListsEnum(dc)%>"
4302	19 May 08	nicklas	316	multiple="false"
4302	19 May 08	nicklas	317	/>
1765	13 Jan 06	nicklas	318	<tbl:columndef
1943	08 Feb 06	nicklas	319	id="reporter.name"
6698	30 Jan 15	nicklas	320	property="$r.name"
6698	30 Jan 15	nicklas	321	exportproperty="reporter.name"
1765	13 Jan 06	nicklas	322	datatype="string"
1943	08 Feb 06	nicklas	323	title="[Rep] Name"
7014	12 Nov 15	nicklas	324	sortable="<%=readReporter%>"
7014	12 Nov 15	nicklas	325	filterable="<%=readReporter%>"
7014	12 Nov 15	nicklas	326	exportable="<%=readReporter%>"
1765	13 Jan 06	nicklas	327	/>
1943	08 Feb 06	nicklas	328	<%
7014	12 Nov 15	nicklas	329	if (readReporter)
1943	08 Feb 06	nicklas	330	{
7014	12 Nov 15	nicklas	331	%>
7014	12 Nov 15	nicklas	332	<tbl:columndef
7014	12 Nov 15	nicklas	333	id="reporter.externalId"
7014	12 Nov 15	nicklas	334	clazz="uniquecol"
7014	12 Nov 15	nicklas	335	property="$r.externalId"
7014	12 Nov 15	nicklas	336	exportproperty="reporter.externalId"
7014	12 Nov 15	nicklas	337	datatype="string"
7014	12 Nov 15	nicklas	338	title="[Rep] ID"
7014	12 Nov 15	nicklas	339	sortable="true"
7014	12 Nov 15	nicklas	340	filterable="true"
7014	12 Nov 15	nicklas	341	exportable="true"
7014	12 Nov 15	nicklas	342	/>
7014	12 Nov 15	nicklas	343	<tbl:columndef
7014	12 Nov 15	nicklas	344	id="reporter.symbol"
7014	12 Nov 15	nicklas	345	property="$r.symbol"
7014	12 Nov 15	nicklas	346	exportproperty="reporter.symbol"
7014	12 Nov 15	nicklas	347	datatype="string"
7014	12 Nov 15	nicklas	348	title="[Rep] Gene symbol"
7014	12 Nov 15	nicklas	349	sortable="true"
7014	12 Nov 15	nicklas	350	filterable="true"
7014	12 Nov 15	nicklas	351	exportable="true"
7014	12 Nov 15	nicklas	352	/>
7014	12 Nov 15	nicklas	353	<tbl:columndef
7014	12 Nov 15	nicklas	354	id="reporter.description"
7014	12 Nov 15	nicklas	355	property="$r.description"
7014	12 Nov 15	nicklas	356	exportproperty="reporter.description"
7014	12 Nov 15	nicklas	357	datatype="string"
7014	12 Nov 15	nicklas	358	title="[Rep] Description"
7014	12 Nov 15	nicklas	359	sortable="true"
7014	12 Nov 15	nicklas	360	filterable="true"
7014	12 Nov 15	nicklas	361	exportable="true"
7014	12 Nov 15	nicklas	362	/>
7014	12 Nov 15	nicklas	363	<tbl:columndef
7014	12 Nov 15	nicklas	364	id="reporter.lastUpdate"
7014	12 Nov 15	nicklas	365	property="$r.lastUpdate"
7014	12 Nov 15	nicklas	366	exportproperty="reporter.lastUpdate"
7014	12 Nov 15	nicklas	367	datatype="timestamp"
7014	12 Nov 15	nicklas	368	title="[Rep] Last update"
7014	12 Nov 15	nicklas	369	sortable="true"
7014	12 Nov 15	nicklas	370	filterable="true"
7014	12 Nov 15	nicklas	371	exportable="true"
7014	12 Nov 15	nicklas	372	formatter="<%=dateFormatter%>"
7014	12 Nov 15	nicklas	373	/>
7014	12 Nov 15	nicklas	374	<%
7014	12 Nov 15	nicklas	375	Enumeration<String, String> types = new Enumeration<String, String>();
7014	12 Nov 15	nicklas	376	ItemResultList<ReporterType> reporterTypes = typeQuery.list(dc);
7014	12 Nov 15	nicklas	377	types.add("", "- none -");
7014	12 Nov 15	nicklas	378	for (ReporterType rt : reporterTypes)
2747	19 Oct 06	enell	379	{
7014	12 Nov 15	nicklas	380	types.add(Integer.toString(rt.getId()), HTML.encodeTags(rt.getName()));
2747	19 Oct 06	enell	381	}
7014	12 Nov 15	nicklas	382	%>
7014	12 Nov 15	nicklas	383	<tbl:columndef
7014	12 Nov 15	nicklas	384	id="reporter.reporterType"
7014	12 Nov 15	nicklas	385	property="$r.reporterType"
7014	12 Nov 15	nicklas	386	sortproperty="$r.reporterType.name"
7014	12 Nov 15	nicklas	387	exportproperty="reporter.reporterType.name:string"
7014	12 Nov 15	nicklas	388	datatype="int"
7014	12 Nov 15	nicklas	389	enumeration="<%=types%>"
7014	12 Nov 15	nicklas	390	title="[Rep] Type"
7014	12 Nov 15	nicklas	391	sortable="true"
7014	12 Nov 15	nicklas	392	filterable="true"
7014	12 Nov 15	nicklas	393	exportable="true"
7014	12 Nov 15	nicklas	394	/>
7014	12 Nov 15	nicklas	395	<%
7014	12 Nov 15	nicklas	396	if (reporterProperties != null)
7014	12 Nov 15	nicklas	397	{
7014	12 Nov 15	nicklas	398	for (ExtendedProperty ep : reporterProperties)
7014	12 Nov 15	nicklas	399	{
7014	12 Nov 15	nicklas	400	String name = ep.getName();
7014	12 Nov 15	nicklas	401	%>
7014	12 Nov 15	nicklas	402	<tbl:columndef
7014	12 Nov 15	nicklas	403	id="<%="reporter."+name%>"
7014	12 Nov 15	nicklas	404	property="<%="$r."+name%>"
7014	12 Nov 15	nicklas	405	exportproperty="<%="reporter."+name%>"
7014	12 Nov 15	nicklas	406	datatype="<%=ep.getType().getStringValue()%>"
7014	12 Nov 15	nicklas	407	title="<%="[Rep] "+HTML.encodeTags(ep.getTitle())%>"
7014	12 Nov 15	nicklas	408	sortable="true"
7014	12 Nov 15	nicklas	409	filterable="true"
7014	12 Nov 15	nicklas	410	exportable="true"
7014	12 Nov 15	nicklas	411	formatter="<%=FormatterFactory.getExtendedPropertyFormatter(sc, ep)%>"
7014	12 Nov 15	nicklas	412	/>
7014	12 Nov 15	nicklas	413	<%
7014	12 Nov 15	nicklas	414	}
7014	12 Nov 15	nicklas	415	}
1943	08 Feb 06	nicklas	416	}
1943	08 Feb 06	nicklas	417	%>
1943	08 Feb 06	nicklas	418	<tbl:columndef
1943	08 Feb 06	nicklas	419	id="feature.position"
4387	11 Aug 08	nicklas	420	clazz="uniquecol"
6698	30 Jan 15	nicklas	421	property="$f.position"
6698	30 Jan 15	nicklas	422	exportproperty="feature.position"
1943	08 Feb 06	nicklas	423	datatype="int"
1943	08 Feb 06	nicklas	424	title="[Feat] Position"
1943	08 Feb 06	nicklas	425	sortable="true"
1943	08 Feb 06	nicklas	426	filterable="true"
1943	08 Feb 06	nicklas	427	exportable="true"
1943	08 Feb 06	nicklas	428	/>
1943	08 Feb 06	nicklas	429	<tbl:columndef
4093	18 Jan 08	enell	430	id="feature.externalId"
4387	11 Aug 08	nicklas	431	clazz="uniquecol"
6698	30 Jan 15	nicklas	432	property="$f.externalId"
6698	30 Jan 15	nicklas	433	exportproperty="feature.externalId"
4093	18 Jan 08	enell	434	datatype="string"
4093	18 Jan 08	enell	435	title="[Feat] Feature ID"
4093	18 Jan 08	enell	436	sortable="true"
4093	18 Jan 08	enell	437	filterable="true"
4093	18 Jan 08	enell	438	exportable="true"
4093	18 Jan 08	enell	439	/>
4093	18 Jan 08	enell	440	<tbl:columndef
1943	08 Feb 06	nicklas	441	id="feature.block"
6698	30 Jan 15	nicklas	442	property="$f.arrayDesignBlock.blockNumber"
6698	30 Jan 15	nicklas	443	exportproperty="feature.arrayDesignBlock.blockNumber"
1943	08 Feb 06	nicklas	444	datatype="int"
1943	08 Feb 06	nicklas	445	title="[Feat] Block"
1943	08 Feb 06	nicklas	446	sortable="true"
1943	08 Feb 06	nicklas	447	filterable="true"
1943	08 Feb 06	nicklas	448	exportable="true"
1943	08 Feb 06	nicklas	449	/>
1943	08 Feb 06	nicklas	450	<tbl:columndef
1943	08 Feb 06	nicklas	451	id="feature.metaGridX"
6698	30 Jan 15	nicklas	452	property="$f.arrayDesignBlock.metaGridX"
6935	23 Jun 15	nicklas	453	exportproperty="feature.arrayDesignBlock.metaGridX"
1943	08 Feb 06	nicklas	454	datatype="int"
1943	08 Feb 06	nicklas	455	title="[Feat] Meta grid X"
1943	08 Feb 06	nicklas	456	sortable="true"
1943	08 Feb 06	nicklas	457	filterable="true"
1943	08 Feb 06	nicklas	458	exportable="true"
1943	08 Feb 06	nicklas	459	/>
1943	08 Feb 06	nicklas	460	<tbl:columndef
1943	08 Feb 06	nicklas	461	id="feature.metaGridY"
6698	30 Jan 15	nicklas	462	property="$f.arrayDesignBlock.metaGridY"
6698	30 Jan 15	nicklas	463	exportproperty="feature.arrayDesignBlock.metaGridY"
1943	08 Feb 06	nicklas	464	datatype="int"
1943	08 Feb 06	nicklas	465	title="[Feat] Meta grid Y"
1943	08 Feb 06	nicklas	466	sortable="true"
1943	08 Feb 06	nicklas	467	filterable="true"
1943	08 Feb 06	nicklas	468	exportable="true"
1943	08 Feb 06	nicklas	469	/>
1943	08 Feb 06	nicklas	470	<tbl:columndef
1943	08 Feb 06	nicklas	471	id="feature.row"
6698	30 Jan 15	nicklas	472	property="$f.row"
6698	30 Jan 15	nicklas	473	exportproperty="feature.row"
1943	08 Feb 06	nicklas	474	datatype="int"
1943	08 Feb 06	nicklas	475	title="[Feat] Row"
1943	08 Feb 06	nicklas	476	sortable="true"
1943	08 Feb 06	nicklas	477	filterable="true"
1943	08 Feb 06	nicklas	478	exportable="true"
1943	08 Feb 06	nicklas	479	/>
1943	08 Feb 06	nicklas	480	<tbl:columndef
1943	08 Feb 06	nicklas	481	id="feature.column"
6698	30 Jan 15	nicklas	482	property="$f.column"
6698	30 Jan 15	nicklas	483	exportproperty="feature.column"
1943	08 Feb 06	nicklas	484	datatype="int"
1943	08 Feb 06	nicklas	485	title="[Feat] Column"
1943	08 Feb 06	nicklas	486	sortable="true"
1943	08 Feb 06	nicklas	487	filterable="true"
1943	08 Feb 06	nicklas	488	exportable="true"
1943	08 Feb 06	nicklas	489	/>
1943	08 Feb 06	nicklas	490	<tbl:columndef
1943	08 Feb 06	nicklas	491	id="feature.blockSizeX"
6698	30 Jan 15	nicklas	492	property="$f.arrayDesignBlock.blockSizeX"
6698	30 Jan 15	nicklas	493	exportproperty="feature.arrayDesignBlock.blockSizeX"
1943	08 Feb 06	nicklas	494	datatype="int"
1943	08 Feb 06	nicklas	495	title="[Feat] Block size X"
1943	08 Feb 06	nicklas	496	sortable="true"
1943	08 Feb 06	nicklas	497	filterable="true"
1943	08 Feb 06	nicklas	498	exportable="true"
1943	08 Feb 06	nicklas	499	/>
1943	08 Feb 06	nicklas	500	<tbl:columndef
1943	08 Feb 06	nicklas	501	id="feature.blockSizeY"
6698	30 Jan 15	nicklas	502	property="$f.arrayDesignBlock.blockSizeY"
6698	30 Jan 15	nicklas	503	exportproperty="feature.arrayDesignBlock.blockSizeY"
1943	08 Feb 06	nicklas	504	datatype="int"
1943	08 Feb 06	nicklas	505	title="[Feat] Block size Y"
1943	08 Feb 06	nicklas	506	sortable="true"
1943	08 Feb 06	nicklas	507	filterable="true"
1943	08 Feb 06	nicklas	508	exportable="true"
1943	08 Feb 06	nicklas	509	/>
1943	08 Feb 06	nicklas	510	<tbl:columndef
1943	08 Feb 06	nicklas	511	id="feature.originX"
6698	30 Jan 15	nicklas	512	property="$f.arrayDesignBlock.originX"
6698	30 Jan 15	nicklas	513	exportproperty="feature.arrayDesignBlock.originX"
1943	08 Feb 06	nicklas	514	datatype="int"
1943	08 Feb 06	nicklas	515	title="[Feat] Origin X"
1943	08 Feb 06	nicklas	516	sortable="true"
1943	08 Feb 06	nicklas	517	filterable="true"
1943	08 Feb 06	nicklas	518	exportable="true"
1943	08 Feb 06	nicklas	519	/>
1943	08 Feb 06	nicklas	520	<tbl:columndef
1943	08 Feb 06	nicklas	521	id="feature.originY"
6698	30 Jan 15	nicklas	522	property="$f.arrayDesignBlock.originY"
6698	30 Jan 15	nicklas	523	exportproperty="feature.arrayDesignBlock.originY"
1943	08 Feb 06	nicklas	524	datatype="int"
1943	08 Feb 06	nicklas	525	title="[Feat] Origin Y"
1943	08 Feb 06	nicklas	526	sortable="true"
1943	08 Feb 06	nicklas	527	filterable="true"
1943	08 Feb 06	nicklas	528	exportable="true"
1943	08 Feb 06	nicklas	529	/>
1943	08 Feb 06	nicklas	530	<tbl:columndef
1943	08 Feb 06	nicklas	531	id="feature.spacingX"
6698	30 Jan 15	nicklas	532	property="$f.arrayDesignBlock.spacingX"
6698	30 Jan 15	nicklas	533	exportproperty="feature.arrayDesignBlock.spacingX"
1943	08 Feb 06	nicklas	534	datatype="int"
1943	08 Feb 06	nicklas	535	title="[Feat] Spacing X"
1943	08 Feb 06	nicklas	536	sortable="true"
1943	08 Feb 06	nicklas	537	filterable="true"
1943	08 Feb 06	nicklas	538	exportable="true"
1943	08 Feb 06	nicklas	539	/>
1943	08 Feb 06	nicklas	540	<tbl:columndef
1943	08 Feb 06	nicklas	541	id="feature.spacingY"
6698	30 Jan 15	nicklas	542	property="$f.arrayDesignBlock.spacingY"
6698	30 Jan 15	nicklas	543	exportproperty="feature.arrayDesignBlock.spacingY"
1943	08 Feb 06	nicklas	544	datatype="int"
1943	08 Feb 06	nicklas	545	title="[Feat] Spacing Y"
1943	08 Feb 06	nicklas	546	sortable="true"
1943	08 Feb 06	nicklas	547	filterable="true"
1943	08 Feb 06	nicklas	548	exportable="true"
1943	08 Feb 06	nicklas	549	/>
1943	08 Feb 06	nicklas	550	<tbl:columndef
1943	08 Feb 06	nicklas	551	id="well.row"
6698	30 Jan 15	nicklas	552	property="$f.well.row"
6698	30 Jan 15	nicklas	553	exportproperty="feature.well.row"
1943	08 Feb 06	nicklas	554	datatype="int"
1943	08 Feb 06	nicklas	555	title="[Well] Row"
1943	08 Feb 06	nicklas	556	sortable="true"
4866	31 Mar 09	martin	557	filterable="true"
4866	31 Mar 09	martin	558	enumeration="<%=plateRows%>"
1943	08 Feb 06	nicklas	559	exportable="true"
4866	31 Mar 09	martin	560	formatter="<%=rowFormatter%>"
1943	08 Feb 06	nicklas	561	/>
1943	08 Feb 06	nicklas	562	<tbl:columndef
1943	08 Feb 06	nicklas	563	id="well.column"
6698	30 Jan 15	nicklas	564	property="$f.well.column"
6698	30 Jan 15	nicklas	565	exportproperty="feature.well.column"
1943	08 Feb 06	nicklas	566	datatype="int"
1943	08 Feb 06	nicklas	567	title="[Well] Column"
1943	08 Feb 06	nicklas	568	sortable="true"
1943	08 Feb 06	nicklas	569	filterable="true"
6497	26 Jun 14	nicklas	570	enumeration="<%=plateColumns%>"
1943	08 Feb 06	nicklas	571	exportable="true"
4866	31 Mar 09	martin	572	formatter="<%=columnFormatter%>"
1943	08 Feb 06	nicklas	573	/>
1943	08 Feb 06	nicklas	574	<tbl:columndef
1943	08 Feb 06	nicklas	575	id="well.plate"
6698	30 Jan 15	nicklas	576	property="$f.well.plate.name"
6698	30 Jan 15	nicklas	577	exportproperty="feature.well.plate.name"
1943	08 Feb 06	nicklas	578	datatype="string"
1943	08 Feb 06	nicklas	579	title="[Well] Plate"
1943	08 Feb 06	nicklas	580	sortable="true"
1943	08 Feb 06	nicklas	581	filterable="true"
1943	08 Feb 06	nicklas	582	exportable="true"
1943	08 Feb 06	nicklas	583	/>
6040	30 Mar 12	nicklas	584	<tbl:columndef
6040	30 Mar 12	nicklas	585	id="xt-columns"
6040	30 Mar 12	nicklas	586	extensions="<%=columnsInvoker%>"
6040	30 Mar 12	nicklas	587	jspcontext="<%=jspContext%>"
6040	30 Mar 12	nicklas	588	/>
6604	18 Nov 14	nicklas	589	<div class="panelgroup bg-filled-50 bottomborder">
5952	10 Feb 12	nicklas	590	<tbl:toolbar
5952	10 Feb 12	nicklas	591	subclass="bottomborder"
5952	10 Feb 12	nicklas	592	visible="<%=mode.hasToolbar()%>"
5952	10 Feb 12	nicklas	593	>
5952	10 Feb 12	nicklas	594	<tbl:button
6311	23 Aug 13	nicklas	595	id="btnColumns"
5952	10 Feb 12	nicklas	596	image="columns.png"
5952	10 Feb 12	nicklas	597	title="Columns…"
5952	10 Feb 12	nicklas	598	tooltip="Show, hide and re-order columns"
5952	10 Feb 12	nicklas	599	/>
5952	10 Feb 12	nicklas	600	<tbl:button
6311	23 Aug 13	nicklas	601	id="btnNewReporterList"
5952	10 Feb 12	nicklas	602	image="add.png"
5952	10 Feb 12	nicklas	603	title="New reporter list…"
5952	10 Feb 12	nicklas	604	tooltip="Create a new reporter list from matching spots"
5952	10 Feb 12	nicklas	605	visible="<%=sc.hasPermission(Permission.CREATE, Item.REPORTERLIST)%>"
5952	10 Feb 12	nicklas	606	/>
5952	10 Feb 12	nicklas	607	<tbl:button
6311	23 Aug 13	nicklas	608	id="btnImport"
6311	23 Aug 13	nicklas	609	data-plugin-type="IMPORT"
5952	10 Feb 12	nicklas	610	image="import.png"
5952	10 Feb 12	nicklas	611	title="Import…"
5952	10 Feb 12	nicklas	612	tooltip="Import data"
5952	10 Feb 12	nicklas	613	visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>"
5952	10 Feb 12	nicklas	614	/>
5952	10 Feb 12	nicklas	615	<tbl:button
6311	23 Aug 13	nicklas	616	id="btnExport"
6311	23 Aug 13	nicklas	617	data-plugin-type="EXPORT"
5952	10 Feb 12	nicklas	618	image="export.png"
5952	10 Feb 12	nicklas	619	title="Export…"
5952	10 Feb 12	nicklas	620	tooltip="Export data"
5952	10 Feb 12	nicklas	621	visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>"
5952	10 Feb 12	nicklas	622	/>
5952	10 Feb 12	nicklas	623	<tbl:button
6311	23 Aug 13	nicklas	624	id="btnRunPlugin"
6311	23 Aug 13	nicklas	625	data-plugin-type="OTHER"
5952	10 Feb 12	nicklas	626	image="runplugin.png"
5952	10 Feb 12	nicklas	627	title="Run plugin…"
5952	10 Feb 12	nicklas	628	tooltip="Run a plugin"
5952	10 Feb 12	nicklas	629	visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>"
5952	10 Feb 12	nicklas	630	/>
5952	10 Feb 12	nicklas	631	<ext:render extensions="<%=invoker%>" context="<%=jspContext%>"
7604	25 Feb 19	nicklas	632	wrapper="<%=new PrefixSuffixRenderer<ButtonAction>(jspContext, "<td>", "</td>") %>"/>
5952	10 Feb 12	nicklas	633	</tbl:toolbar>
5952	10 Feb 12	nicklas	634	<tbl:panel>
6182	23 Oct 12	nicklas	635	<tbl:presetselector />
5952	10 Feb 12	nicklas	636	<tbl:navigator
5952	10 Feb 12	nicklas	637	page="<%=cc.getPage()%>"
5952	10 Feb 12	nicklas	638	rowsperpage="<%=cc.getRowsPerPage()%>"
5952	10 Feb 12	nicklas	639	totalrows="<%=rawData == null ? 0 : rawData.getTotalCount()%>"
5952	10 Feb 12	nicklas	640	visible="<%=mode.hasNavigator()%>"
5952	10 Feb 12	nicklas	641	/>
5952	10 Feb 12	nicklas	642	</tbl:panel>
5952	10 Feb 12	nicklas	643	</div>
1765	13 Jan 06	nicklas	644	<tbl:data>
5948	08 Feb 12	nicklas	645	<tbl:headers>
5948	08 Feb 12	nicklas	646	<tbl:headerrow>
7943	04 May 21	nicklas	647	<tbl:header clazz="row-index bg-filled-100" />
5948	08 Feb 12	nicklas	648	<tbl:columnheaders />
5948	08 Feb 12	nicklas	649	</tbl:headerrow>
6698	30 Jan 15	nicklas	650	<%
6698	30 Jan 15	nicklas	651	int numFilters = cc.getNumPropertyFilters();
6698	30 Jan 15	nicklas	652	int numRows = cc.getFilterRows();
6698	30 Jan 15	nicklas	653	for (int filterNo = 0; filterNo < numRows; filterNo++)
6698	30 Jan 15	nicklas	654	{
6698	30 Jan 15	nicklas	655	boolean lastRow = filterNo == numRows-1;
6698	30 Jan 15	nicklas	656	%>
6698	30 Jan 15	nicklas	657	<tbl:headerrow>
7943	04 May 21	nicklas	658	<tbl:header subclass="row-index bg-filled-100">
7943	04 May 21	nicklas	659	<div class="index-<%=mode.getName()%>">
7943	04 May 21	nicklas	660	<div class="index"></div>
7943	04 May 21	nicklas	661	<div class="check">
7943	04 May 21	nicklas	662	<base:icon
7943	04 May 21	nicklas	663	subclass="link table-check"
7943	04 May 21	nicklas	664	image="check_uncheck.png"
7943	04 May 21	nicklas	665	tooltip="Toggle all (use CTRL, ALT or SHIFT to check/uncheck)"
7943	04 May 21	nicklas	666	visible="<%=lastRow && mode.hasCheck()%>"
7943	04 May 21	nicklas	667	/>
7943	04 May 21	nicklas	668	</div>
7943	04 May 21	nicklas	669	<div class="icons">
7943	04 May 21	nicklas	670	<base:icon
7943	04 May 21	nicklas	671	subclass="link table-filter-row-action"
7943	04 May 21	nicklas	672	image="add.png"
7943	04 May 21	nicklas	673	tooltip="Add extra filter row"
7943	04 May 21	nicklas	674	visible="<%=lastRow%>"
7943	04 May 21	nicklas	675	/><base:icon
7943	04 May 21	nicklas	676	subclass="link table-filter-row-action"
7943	04 May 21	nicklas	677	image="remove.png"
7943	04 May 21	nicklas	678	tooltip="Remove this filter row"
7943	04 May 21	nicklas	679	visible="<%=numRows > 1 \|\| numFilters > 0 %>"
7943	04 May 21	nicklas	680	data-remove-row="<%=filterNo%>"
7943	04 May 21	nicklas	681	/>
7943	04 May 21	nicklas	682	</div>
7943	04 May 21	nicklas	683	</div>
6698	30 Jan 15	nicklas	684	</tbl:header>
6698	30 Jan 15	nicklas	685	<tbl:propertyfilter row="<%=filterNo%>" />
6698	30 Jan 15	nicklas	686	</tbl:headerrow>
6698	30 Jan 15	nicklas	687	<%
6698	30 Jan 15	nicklas	688	}
6698	30 Jan 15	nicklas	689	%>
7913	22 Feb 21	nicklas	690	<tbl:columnsubtitles />
5948	08 Feb 12	nicklas	691	</tbl:headers>
5948	08 Feb 12	nicklas	692	<tbl:rows>
1765	13 Jan 06	nicklas	693	<%
5952	10 Feb 12	nicklas	694	if (cc.getMessage() != null)
5952	10 Feb 12	nicklas	695	{
5952	10 Feb 12	nicklas	696	%>
6604	18 Nov 14	nicklas	697	<tbl:panel subclass="bg-filled-50">
5952	10 Feb 12	nicklas	698	<div class="messagecontainer error"><%=cc.getMessage()%></div>
5952	10 Feb 12	nicklas	699	</tbl:panel>
5952	10 Feb 12	nicklas	700	<%
5952	10 Feb 12	nicklas	701	cc.setMessage(null);
5952	10 Feb 12	nicklas	702	}
1765	13 Jan 06	nicklas	703	int index = cc.getPage()*cc.getRowsPerPage();
2029	20 Feb 06	nicklas	704	int selectedItemId = cc.getId();
2029	20 Feb 06	nicklas	705	if (rawData != null)
1765	13 Jan 06	nicklas	706	{
2433	27 Jun 06	nicklas	707	String tooltip = mode.isSelectionMode() ?
2433	27 Jun 06	nicklas	708	"Select this item" : "View this item";
2029	20 Feb 06	nicklas	709	while (rawData.hasNext())
2029	20 Feb 06	nicklas	710	{
2029	20 Feb 06	nicklas	711	RawData item = rawData.next();
2029	20 Feb 06	nicklas	712	int itemId = item.getId();
2029	20 Feb 06	nicklas	713	index++;
2029	20 Feb 06	nicklas	714	numListed++;
2029	20 Feb 06	nicklas	715	%>
2029	20 Feb 06	nicklas	716	<tbl:row>
7943	04 May 21	nicklas	717	<tbl:header clazz="row-index bg-filled-100">
7943	04 May 21	nicklas	718	<div class="index-<%=mode.getName()%>">
7943	04 May 21	nicklas	719	<div class="index <%=index>999?"index-smaller":""%>"><%=index%></div>
7943	04 May 21	nicklas	720	<div class="check">
7943	04 May 21	nicklas	721	<base:input
7943	04 May 21	nicklas	722	type="checkbox"
7943	04 May 21	nicklas	723	name="<%=itemId%>"
7943	04 May 21	nicklas	724	value="<%=itemId%>"
7943	04 May 21	nicklas	725	checked="<%=request.getParameter(Integer.toString(itemId)) != null%>"
7943	04 May 21	nicklas	726	visible="<%=mode.hasCheck()%>"
7943	04 May 21	nicklas	727	/>
7943	04 May 21	nicklas	728	<base:input
7943	04 May 21	nicklas	729	type="radio"
7943	04 May 21	nicklas	730	name="item_id"
7943	04 May 21	nicklas	731	value="<%=itemId%>"
7943	04 May 21	nicklas	732	checked="<%=selectedItemId == itemId%>"
7943	04 May 21	nicklas	733	visible="<%=mode.hasRadio()%>"
7943	04 May 21	nicklas	734	/>
7943	04 May 21	nicklas	735	</div>
7943	04 May 21	nicklas	736	<div class="icons"></div>
7943	04 May 21	nicklas	737	</div>
7943	04 May 21	nicklas	738	</tbl:header>
6311	23 Aug 13	nicklas	739	<tbl:cell column="position"><div
6311	23 Aug 13	nicklas	740	class="link table-item"
6311	23 Aug 13	nicklas	741	data-item-id="<%=itemId%>"
6311	23 Aug 13	nicklas	742	data-extra-url="<%="&rawbioassay_id="+rawBioAssayId%>"
6311	23 Aug 13	nicklas	743	tabindex="0"
2433	27 Jun 06	nicklas	744	title="<%=tooltip%>"><%=item.getPosition()%></div></tbl:cell>
4332	12 Jun 08	martin	745	<tbl:cell column="id"><%=item.getId()%></tbl:cell>
2029	20 Feb 06	nicklas	746	<tbl:cell column="block"><%=item.getBlock()%></tbl:cell>
4866	31 Mar 09	martin	747	<tbl:cell column="row"><tbl:cellvalue value="<%=item.getRow()%>"/></tbl:cell>
4866	31 Mar 09	martin	748	<tbl:cell column="column"><tbl:cellvalue value="<%=item.getColumn()%>"/></tbl:cell>
2029	20 Feb 06	nicklas	749	<tbl:cell column="metaGridX"><%=item.getMetaGridX()%></tbl:cell>
2029	20 Feb 06	nicklas	750	<tbl:cell column="metaGridY"><%=item.getMetaGridY()%></tbl:cell>
2029	20 Feb 06	nicklas	751	<tbl:cell column="x"><%=item.getX()%></tbl:cell>
2029	20 Feb 06	nicklas	752	<tbl:cell column="y"><%=item.getY()%></tbl:cell>
1943	08 Feb 06	nicklas	753	<%
2029	20 Feb 06	nicklas	754	for (RawDataProperty rdp : rawBioAssay.getRawDataType().getProperties())
1943	08 Feb 06	nicklas	755	{
1943	08 Feb 06	nicklas	756	%>
2942	22 Nov 06	nicklas	757	<tbl:cell column="<%="raw."+rdp.getName()%>"><tbl:cellvalue value="<%=item.getExtended(rdp.getName())%>" /></tbl:cell>
1943	08 Feb 06	nicklas	758	<%
1943	08 Feb 06	nicklas	759	}
1943	08 Feb 06	nicklas	760	%>
1943	08 Feb 06	nicklas	761	<%
7014	12 Nov 15	nicklas	762	if (!readReporter)
1943	08 Feb 06	nicklas	763	{
1943	08 Feb 06	nicklas	764	%>
7014	12 Nov 15	nicklas	765	<tbl:cell column="reporter.name"><i>- denied -</i></tbl:cell>
1943	08 Feb 06	nicklas	766	<%
1943	08 Feb 06	nicklas	767	}
1943	08 Feb 06	nicklas	768	else
1943	08 Feb 06	nicklas	769	{
7014	12 Nov 15	nicklas	770	ReporterData reporter = item.getReporter();
7014	12 Nov 15	nicklas	771	if (reporter == null)
2029	20 Feb 06	nicklas	772	{
7014	12 Nov 15	nicklas	773	%>
7014	12 Nov 15	nicklas	774	<tbl:cell column="reporter.name"><i>- none -</i></tbl:cell>
7014	12 Nov 15	nicklas	775	<tbl:cell column="reporter.externalId"><i>- none -</i></tbl:cell>
7014	12 Nov 15	nicklas	776	<%
7014	12 Nov 15	nicklas	777	}
7014	12 Nov 15	nicklas	778	else
7014	12 Nov 15	nicklas	779	{
7014	12 Nov 15	nicklas	780	%>
7014	12 Nov 15	nicklas	781	<tbl:cell column="reporter.name"><%=Base.getLink(ID, reporter.getName(), Item.REPORTER, reporter.getId(), writeReporterPermission)%></tbl:cell>
7014	12 Nov 15	nicklas	782	<tbl:cell column="reporter.externalId"><%=HTML.encodeTags(reporter.getExternalId())%></tbl:cell>
7014	12 Nov 15	nicklas	783	<tbl:cell column="reporter.symbol"><%=HTML.encodeTags(reporter.getSymbol())%></tbl:cell>
7014	12 Nov 15	nicklas	784	<tbl:cell column="reporter.description"><%=HTML.encodeTags(reporter.getDescription())%></tbl:cell>
7014	12 Nov 15	nicklas	785	<tbl:cell column="reporter.lastUpdate" value="<%=reporter.getLastUpdate()%>" />
7014	12 Nov 15	nicklas	786	<tbl:cell column="reporter.reporterType"><base:propertyvalue dbcontrol="<%=dc%>" item="<%=reporter%>" property="reporterType.name" /></tbl:cell>
7014	12 Nov 15	nicklas	787	<%
7014	12 Nov 15	nicklas	788	if (reporterProperties != null)
2313	23 May 06	nicklas	789	{
7014	12 Nov 15	nicklas	790	for (ExtendedProperty ep : reporterProperties)
7014	12 Nov 15	nicklas	791	{
7014	12 Nov 15	nicklas	792	String name = ep.getName();
7014	12 Nov 15	nicklas	793	%>
7014	12 Nov 15	nicklas	794	<tbl:cell column="<%="reporter."+name%>"><tbl:cellvalue value="<%=reporter.getExtended(name)%>" /></tbl:cell>
7014	12 Nov 15	nicklas	795	<%
7014	12 Nov 15	nicklas	796	}
2313	23 May 06	nicklas	797	}
2029	20 Feb 06	nicklas	798	}
1943	08 Feb 06	nicklas	799	}
2029	20 Feb 06	nicklas	800	%>
2029	20 Feb 06	nicklas	801	<%
2314	23 May 06	nicklas	802	FeatureData feature = item.getFeature();
2029	20 Feb 06	nicklas	803	if (feature == null)
1943	08 Feb 06	nicklas	804	{
1943	08 Feb 06	nicklas	805	%>
2029	20 Feb 06	nicklas	806	<tbl:cell column="feature.position"><i>- none -</i></tbl:cell>
4093	18 Jan 08	enell	807	<tbl:cell column="feature.externalId"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	808	<tbl:cell column="feature.row"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	809	<tbl:cell column="feature.column"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	810	<tbl:cell column="feature.block"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	811	<tbl:cell column="feature.metaGridX"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	812	<tbl:cell column="feature.metaGridY"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	813	<tbl:cell column="feature.blockSizeX"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	814	<tbl:cell column="feature.blockSizeY"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	815	<tbl:cell column="feature.originX"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	816	<tbl:cell column="feature.originY"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	817	<tbl:cell column="feature.spacingX"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	818	<tbl:cell column="feature.spacingY"><i>- none -</i></tbl:cell>
1943	08 Feb 06	nicklas	819	<%
1943	08 Feb 06	nicklas	820	}
1943	08 Feb 06	nicklas	821	else
1943	08 Feb 06	nicklas	822	{
1943	08 Feb 06	nicklas	823	%>
2029	20 Feb 06	nicklas	824	<tbl:cell column="feature.position"><%=feature.getPosition()%></tbl:cell>
4093	18 Jan 08	enell	825	<tbl:cell column="feature.externalId"><%=HTML.encodeTags(feature.getExternalId())%></tbl:cell>
2029	20 Feb 06	nicklas	826	<tbl:cell column="feature.row"><%=feature.getRow()%></tbl:cell>
2029	20 Feb 06	nicklas	827	<tbl:cell column="feature.column"><%=feature.getColumn()%></tbl:cell>
1943	08 Feb 06	nicklas	828	<%
2029	20 Feb 06	nicklas	829	ArrayDesignBlock block = null;
2029	20 Feb 06	nicklas	830	try
2029	20 Feb 06	nicklas	831	{
2029	20 Feb 06	nicklas	832	block = Feature.getArrayDesignBlock(dc, feature);
2029	20 Feb 06	nicklas	833	}
2029	20 Feb 06	nicklas	834	catch (PermissionDeniedException ex)
2029	20 Feb 06	nicklas	835	{}
2029	20 Feb 06	nicklas	836	if (block == null)
2029	20 Feb 06	nicklas	837	{
2029	20 Feb 06	nicklas	838	%>
2029	20 Feb 06	nicklas	839	<tbl:cell column="feature.block"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	840	<tbl:cell column="feature.metaGridX"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	841	<tbl:cell column="feature.metaGridY"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	842	<tbl:cell column="feature.blockSizeX"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	843	<tbl:cell column="feature.blockSizeY"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	844	<tbl:cell column="feature.originX"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	845	<tbl:cell column="feature.originY"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	846	<tbl:cell column="feature.spacingX"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	847	<tbl:cell column="feature.spacingY"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	848	<%
2029	20 Feb 06	nicklas	849	}
2029	20 Feb 06	nicklas	850	else
2029	20 Feb 06	nicklas	851	{
2029	20 Feb 06	nicklas	852	%>
2029	20 Feb 06	nicklas	853	<tbl:cell column="feature.block"><%=block.getBlockNumber()%></tbl:cell>
2029	20 Feb 06	nicklas	854	<tbl:cell column="feature.metaGridX"><%=block.getMetaGridX()%></tbl:cell>
2029	20 Feb 06	nicklas	855	<tbl:cell column="feature.metaGridY"><%=block.getMetaGridY()%></tbl:cell>
2029	20 Feb 06	nicklas	856	<tbl:cell column="feature.blockSizeX"><%=block.getBlockSizeX()%></tbl:cell>
2029	20 Feb 06	nicklas	857	<tbl:cell column="feature.blockSizeY"><%=block.getBlockSizeY()%></tbl:cell>
2029	20 Feb 06	nicklas	858	<tbl:cell column="feature.originX"><%=block.getOriginX()%></tbl:cell>
2029	20 Feb 06	nicklas	859	<tbl:cell column="feature.originY"><%=block.getOriginY()%></tbl:cell>
2029	20 Feb 06	nicklas	860	<tbl:cell column="feature.spacingX"><%=block.getSpacingX()%></tbl:cell>
2029	20 Feb 06	nicklas	861	<tbl:cell column="feature.spacingY"><%=block.getSpacingY()%></tbl:cell>
2029	20 Feb 06	nicklas	862	<%
2029	20 Feb 06	nicklas	863	}
2029	20 Feb 06	nicklas	864	Well well = null;
2029	20 Feb 06	nicklas	865	boolean readWell = true;
2029	20 Feb 06	nicklas	866	try
2029	20 Feb 06	nicklas	867	{
2029	20 Feb 06	nicklas	868	well = Feature.getWell(dc, feature);
2029	20 Feb 06	nicklas	869	}
2029	20 Feb 06	nicklas	870	catch (PermissionDeniedException ex)
2029	20 Feb 06	nicklas	871	{
2029	20 Feb 06	nicklas	872	readWell = false;
2029	20 Feb 06	nicklas	873	}
2029	20 Feb 06	nicklas	874	if (!readWell)
2029	20 Feb 06	nicklas	875	{
2029	20 Feb 06	nicklas	876	%>
2029	20 Feb 06	nicklas	877	<tbl:cell column="well.row"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	878	<tbl:cell column="well.column"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	879	<tbl:cell column="well.plate"><i>- denied -</i></tbl:cell>
2029	20 Feb 06	nicklas	880	<%
2029	20 Feb 06	nicklas	881	}
2029	20 Feb 06	nicklas	882	else if (well == null)
2029	20 Feb 06	nicklas	883	{
2029	20 Feb 06	nicklas	884	%>
2029	20 Feb 06	nicklas	885	<tbl:cell column="well.row"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	886	<tbl:cell column="well.column"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	887	<tbl:cell column="well.plate"><i>- none -</i></tbl:cell>
2029	20 Feb 06	nicklas	888	<%
2029	20 Feb 06	nicklas	889	}
2029	20 Feb 06	nicklas	890	else
2029	20 Feb 06	nicklas	891	{
2029	20 Feb 06	nicklas	892	%>
4866	31 Mar 09	martin	893	<tbl:cell column="well.row"><tbl:cellvalue value="<%=well.getRow()%>"/></tbl:cell>
4866	31 Mar 09	martin	894	<tbl:cell column="well.column"><tbl:cellvalue value="<%=well.getColumn()%>"/></tbl:cell>
2029	20 Feb 06	nicklas	895	<tbl:cell column="well.plate"><%=well.getPlate().getName()%></tbl:cell>
2029	20 Feb 06	nicklas	896	<%
2029	20 Feb 06	nicklas	897	}
1943	08 Feb 06	nicklas	898	}
2029	20 Feb 06	nicklas	899	%>
6040	30 Mar 12	nicklas	900	<tbl:xt-cells dc="<%=dc%>" item="<%=item%>">
6040	30 Mar 12	nicklas	901	<tbl:cell column="xt-columns" />
6040	30 Mar 12	nicklas	902	</tbl:xt-cells>
2029	20 Feb 06	nicklas	903	</tbl:row>
2029	20 Feb 06	nicklas	904	<%
2029	20 Feb 06	nicklas	905	}
1765	13 Jan 06	nicklas	906	}
5952	10 Feb 12	nicklas	907	if (numListed == 0)
5952	10 Feb 12	nicklas	908	{
5952	10 Feb 12	nicklas	909	%>
6604	18 Nov 14	nicklas	910	<tbl:panel subclass="bg-filled-50">
5952	10 Feb 12	nicklas	911	<div class="messagecontainer note">
5952	10 Feb 12	nicklas	912	<%=rawData == null \|\| rawData.getTotalCount() == 0 ? "No raw data were found" : "No raw data on this page. Please select another page!" %>
5952	10 Feb 12	nicklas	913	</div>
5952	10 Feb 12	nicklas	914	</tbl:panel>
5952	10 Feb 12	nicklas	915	<%
5952	10 Feb 12	nicklas	916	}
1765	13 Jan 06	nicklas	917	%>
1765	13 Jan 06	nicklas	918	</tbl:rows>
1765	13 Jan 06	nicklas	919	</tbl:data>
1765	13 Jan 06	nicklas	920	</tbl:table>
1855	27 Jan 06	nicklas	921	</t:tab>
4746	10 Feb 09	nicklas	922	<t:tab id="overview" title="Overview"
4746	10 Feb 09	nicklas	923	tooltip="Display a tree overview of related items" />
7166	07 Jun 16	nicklas	924	<t:tab id="history" title="History"
7166	07 Jun 16	nicklas	925	tooltip="Displays a log with the history of this item"
7166	07 Jun 16	nicklas	926	visible="<%=ChangeHistoryUtil.showChangeHistoryTab(sc)%>" />
1855	27 Jan 06	nicklas	927	</t:tabcontrol>
5952	10 Feb 12	nicklas	928
5952	10 Feb 12	nicklas	929	<base:buttongroup>
6311	23 Aug 13	nicklas	930	<base:button id="btnOk" title="Ok" visible="<%=mode.hasOkButton()%>" />
6311	23 Aug 13	nicklas	931	<base:button id="close" title="Cancel" visible="<%=mode.hasCancelButton()%>" />
6311	23 Aug 13	nicklas	932	<base:button id="close" title="Close" visible="<%=mode.hasCloseButton()%>" />
5952	10 Feb 12	nicklas	933	</base:buttongroup>
5952	10 Feb 12	nicklas	934
1765	13 Jan 06	nicklas	935	</base:body>
1765	13 Jan 06	nicklas	936	</base:page>
1765	13 Jan 06	nicklas	937	<%
1765	13 Jan 06	nicklas	938	}
1765	13 Jan 06	nicklas	939	finally
1765	13 Jan 06	nicklas	940	{
1765	13 Jan 06	nicklas	941	if (rawData != null) rawData.close();
1765	13 Jan 06	nicklas	942	if (dc != null) dc.close();
1765	13 Jan 06	nicklas	943	}
3675	16 Aug 07	jari	944	%>