Henrik Jönsson
Computational Biology and Biological Physics
Department of Theoretical Physics, Lund University

Adr: Sölvegatan 14A, S-223 62 Lund
Ph: +46 46 222 0663, +46 707 235 175
henrik@thep.lu.se
[Comp. Biol. and Biol. Physics] [Theoretical Physics] [Lund University] [Home] [Publications] [Software]

Research:

My main interest is to develop models for multicellular develpmental systems in collaboration with experimental biologists. Included in this is models for gene regulation, molecular reactions and transport, as well as models for cellular growth and proliferation and mechanical interactions. Some projects include:

Mechanical signals in plant shoot development.
In a HFSP-sponsered collaboration with the groups of Jan Traas in Lyon and Elliot Meyerowitz at Caltech.

The paper Developmental patterning by mechanical signals in Arabidopsis has been published (with cover) in the December 12 issue of Science. A swedish press release can be found here, and high resolution pictures can be found here.

Plant stem cell regulation and phyllotaxis.
In collaboration with Eric Mjolsness at UCI, and the Meyerowitz group at Caltech. (Computable plant)

Bacterial and yeast cell colony growth.
Together with Andre Levchenko at the Johns Hopkins University.

Planar cell polarity and auxin distributions in the plant root.
In collaboration with Markus Grebe at Umeå Plant Science Center.

The TGF-b signalling pathway.
In Collaboration with Carsten Peterson at CBBP and P. ten Dijke in Leiden.

Optimization, from parameter fitting to combinatorial optimization.
Relating back to my PhD work with my thesis advisor Bo Söderberg.


Publications

Teaching:

Computational Physics, FYTN03
Systems Biology, BNF079
Theoretical Biophysics, FYTN05/TEK267
The Scientific Method, FYTA13. My slides can be found here.
Biological systems, TEK292. Material for the computer exercise can be found here.

People:

Pawel Krupinski (postdoc)
Pontus Melke (PhD student)
Patrik Sahlin (PhD student)
Christopher Sturk (Master student)

Funding:



Last modified June 2009
henrik@thep.lu.se