BamPair.h

#ifndef theplu_yat_omic_bam_pair
#define theplu_yat_omic_bam_pair

// $Id: BamPair.h 3176 2014-03-15 09:10:37Z peter $

/*
  Copyright (C) 2014 Peter Johansson

  This file is part of the yat library, http://dev.thep.lu.se/yat

  The yat library is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License as
  published by the Free Software Foundation; either version 3 of the
  License, or (at your option) any later version.

  The yat library is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with this program. If not, see <http://www.gnu.org/licenses/>.
*/

#include "BamRead.h"

namespace theplu {
namespace yat {
namespace omic {

  class BamPair
  {
  public:
    BamPair(void);

    BamPair(const BamRead& first, const BamRead& second);

    BamRead& first(void);

    const BamRead& first(void) const;

    BamRead& second(void);

    const BamRead& second(void) const;

  private:
    BamRead first_;
    BamRead second_;
  };


  class BamPairProxy
  {
  public:
    BamPairProxy(void);

    BamPairProxy(const BamRead* first, const BamRead* second);

    const BamRead& first(void) const;

    const BamRead& second(void) const;

    operator BamPair() const;
  private:
    const BamRead* first_;
    const BamRead* second_;
  };

}}}
#endif