![\](ftv2mlastnode.png) theplu | The Department of Theoretical Physics namespace as we define it |
![](ftv2blank.png) ![\](ftv2mlastnode.png) yat | Yat project namespace |
![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) classifier | Classifier related classes |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BootstrapSampler | Class creating trainingset and validationset using bootstrapping |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) ConsensusInputRanker | Robust algorithm to rank rows in a data matrix versus a target vector |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) CrossValidationSampler | Class splitting a set into training set and validation set in a crossvalidation manner |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) DataLookup1D | Class for general vector view |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) DataLookupWeighted1D | Class for general weighted vector view |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) EnsembleBuilder | Class for ensembles of supervised classifiers |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) FeatureSelector | Interface class for FeatureSelection |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) FeatureSelectorIR | FeatureSelector using an InputRanker |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) FeatureSelectorRandom | Class for selection features by random |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) GaussianKernelFunction | Class for Gaussian kernel calculations |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) IGP | Class for In Group Proportions (IGP) |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) IRRank | Functor retrieving minus rank from a InputRanker to build a ConsensusInputRanker |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) IRRetrieve | Interface class for retrieving information from a InputRanker to build a ConsensusInputRanker |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) InputRanker | Class for ranking rows in a matrix, using a Score and a target vector |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Kernel | Interface Class for Kernels |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KernelFunction | Interface class calculating elements in Kernel |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KernelLookup | Lookup into Kernel |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Kernel_MEV | Memory Efficient Kernel |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Kernel_SEV | Speed Efficient Kernel |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KNN | Nearest Neighbor Classifier |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) NeighborWeightingConcept | Concept check for a Neighbor Weighting Method |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KNN_ReciprocalDistance | A model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KNN_ReciprocalRank | A model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KNN_Uniform | A model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) MatrixLookup | General view into utility::Matrix |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) MatrixLookupWeighted | General view into utility::MatrixWeighted |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) NBC | Naive Bayesian Classifier |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) NCC | Nearest Centroid Classifier |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) PolynomialKernelFunction | Class for polynomial kernel calculations |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) SVM | Support Vector Machine |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) SvmMultiClass | Support Vector Machine for more than two classes |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) SVindex | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Sampler | Interface class for dividing samples into training and validation |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) SubsetGenerator | Class splitting Data into training and validation set |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) SupervisedClassifier | Interface class for supervised classifiers that use data in a matrix format |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) Target | Class for containing sample labels |
![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) normalizer | Normalization of data |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Centralizer | Centralize a range |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) ColumnNormalizer | Using a functor T to normalize each column |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Gauss | Gaussian Normalizer |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) qQuantileNormalizer | Perform Q-quantile normalization |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) QuantileNormalizer | Perform quantile normalization |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) RowNormalizer | Using a functor T to normalize each column |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Spearman | Replace elements with normalized rank |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) Zscore | Zero mean and unity variance |
![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) omic | Classes and functions related to genomics and proteomics |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamFile | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) InBamFile | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2pnode.png) OutBamFile | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) error | Error thrown from OutBamFile::write(const BamRead&) at failure |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamHeader | Wrapper around bam_hdr_t struct |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamPair | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamPairProxy | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamPairIterator | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamRead | Class holding a bam query |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamLessPos | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamLessEnd | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamLessName | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamReadFilter | Filter bam reads |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamReadIterator | Class to iterate through a InBamFile |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamWriter | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) BamWriteIterator | Output iterator for bam file |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Codon | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) AminoAcidEqual | Functor comparing if two Codons translate to the same amino acid |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) DNA | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) DnaComplementer | Functor that calculates genomic complement |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2pnode.png) Fasta | Wrapper class around struct faidx_t in libhts |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) Sequence | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) GenomicPosition | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) GFF | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) GFF2 | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) GFF3 | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2plastnode.png) Pileup | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![](ftv2blank.png) ![\](ftv2lastnode.png) Entry | |
![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) random | Random number distributions |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) RNG | Random Number Generator |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) RNG_state | Class holding state of a random generator |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Discrete | Discrete random number distributions |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Binomial | Binomial distribution |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) DiscreteGeneral | General |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) DiscreteUniform | Discrete uniform distribution |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Geometric | Geomtric Distribution |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) HyperGeometric | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) NegativeHyperGeometric | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Poisson | Poisson Distribution |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Continuous | Continuous random number distributions |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) ContinuousUniform | Uniform distribution |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) ContinuousGeneral | Generates numbers from a histogram in a continuous manner |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Exponential | Generator of random numbers from an exponential distribution |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) Gaussian | Gaussian distribution |
![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) regression | Statistical modeling of data |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) AkimaInterpolation | Non-rounded Akima spline with natural boundary conditions |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) AkimaPeriodicInterpolation | AkimaPeriodic interpolation |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) CSplineInterpolation | Cubic spline with natural boundary conditions |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) CSplinePeriodicInterpolation | Cubic spline with periodic boundary conditions |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) GSLInterpolation | Base class for interfacing GSL interpolation |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Kernel | Interface Class for calculating the weights in a more general way than classical rectangular windows |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KernelBox | Class for KernelBox a.k.a. rectangular window |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KernelTriCube | Class for TriCubal kernel |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Linear | Linear regression |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) LinearInterpolation | Linear interpolation |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) LinearWeighted | Linear regression |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Local | Class for Locally weighted regression |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) MultiDimensional | MultiDimesional fitting |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) MultiDimensionalWeighted | MultiDimesional fitting |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Naive | Naive Regression |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) NaiveWeighted | Naive fitting |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) OneDimensional | Interface Class for One Dimensional fitting |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) OneDimensionalWeighted | Interface Class for One Dimensional fitting in a weighted fashion |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Polynomial | Polynomial regression |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) PolynomialInterpolation | Polynomial interpolation |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) PolynomialWeighted | Polynomial Regression in weighted fashion |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) TukeyBiweight | |
![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) statistics | Statistical methods, classes, and functions |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) AUC | Area Under ROC Curve |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager_base | Base class for averager classes |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager_base2 | Base class for averagers calculating mean and variance |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager_base3 | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager_base4 | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Average | Functor to take average of a range |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Averager | Class to calculate simple (first and second moments) averages |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Averager1 | Class to calculate mean |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Averager3 | Class to calculate 1st, 2nd, and 3rd central moments |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Averager4 | Class to calculate 1st, 2nd, 3rd, and 4th central moments |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) AveragerPair | Class for taking care of mean and covariance of two variables |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) AveragerWeighted | Class to calulate averages with weights |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) AveragerPairWeighted | Class for taking care of mean and covariance of two variables in a weighted manner |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager_traits | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager_traits< utility::unweighted_iterator_tag > | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager_traits< utility::weighted_iterator_tag > | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) averager_pair | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Distance | A convenience class to implement Distance |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) EuclideanDistance | Calculates the Euclidean distance between elements of two ranges |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Fisher | Fisher's exact test |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) FoldChange | Score given by the difference by the group means |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Histogram | Histograms provide a convenient way of presenting the distribution of a set of data |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Kendall | Kendall's tau rank coefficient |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2pnode.png) KolmogorovSmirnov | Kolmogorov Smirnov Test |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) Element | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) KolmogorovSmirnovOneSample | Kolmogorov Smirnov Test for one class |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) LikelihoodRatioTestBinomial | Likelihood-ratio test for binomial data |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Pearson | Class for calculating Pearson correlation |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) PearsonCorrelation | Class for calculating Pearson correlation |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) PearsonDistance | Calculates the Pearson correlation distance between two points given by elements of ranges |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Percentiler | Functor to calculate percentile of a range |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) ROC | Reciever Operating Characteristic |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) SAMScore | Class for score used in Significance Analysis of Microarrays (SAM) |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Score | Interface Class for score classes |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Smoother | Estimating a distribution in a smooth fashion |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) SNRScore | Class for score based on signal-to-noise ratio (SNRScore) |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Spearman | Spearman rank correlation coefficient |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) TukeyBiweightEstimator | Tukey's Biweight Estimator |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) tScore | Class for Fisher's t-test |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) tTest | Class for Student's t-test |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) VectorFunction | Interface Class for vector functors |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Max | Larget element |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Median | Median element |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Mean | Mean element |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Min | Smallest element |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2node.png) Nth_Element | |
![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) WilcoxonFoldChange | WilcoxonFoldChange |
![](ftv2blank.png) ![](ftv2blank.png) ![\](ftv2plastnode.png) utility | Miscellaneous functionality |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) detail | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![o](ftv2pnode.png) weighted_iterator | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) Traversal | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) OstreamIteratorFunc | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) Aligner | Aligning two sequences |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) Cigar | Compact Idiosyncratic Gapped Alignment Report |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) CigarIterator | Iterator over a CIGAR |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) ColumnStream | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) CommandLine | Class for parsing the command line |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Container2D | Concept check for Container2D |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Mutable_Container2D | Concept check for Mutable Container2D |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) TrivialIterator | Concept check for Trivial Iterator |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) DataIteratorConcept | Concept check for Data Iterator |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) DistanceConcept | Concept check for a Distance |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Container2DIterator | Iterator for a Container2D |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) DataIterator | DataIterator |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) DataWeight | Holds a pair of data and associated weight |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) DataWeightProxy | Proxy class for DataWeight |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Deleter | Functor that deletes an object |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) runtime_error | Class used for all runtime error detected within yat library |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) cmd_error | Class used for error reported from Commandline or Option |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) errno_error | Class that contains information reported via global variable errno |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) GSL_error | Class for errors reported from underlying GSL calls |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) IO_error | Class to report errors associated with IO operations |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) FileUtil | Checking file/directory existence and access permissions |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) GetlineIterator | Read from std::istream with std::getline |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Index | Class for storing indices of, e.g., a MatrixLookup |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) unweighted_iterator_tag | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) weighted_iterator_tag | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) weighted_iterator_traits | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) weighted_if_any2 | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) weighted_if_any3 | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) iterator_traits | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) KernelMatrix | A KernelMatrix is a Container2D |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) KernelPCA | Principal Component Analysis on a Kernel Matrix |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) kNNI | KNNimpute |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Matrix | Interface to GSL matrix |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) MatrixWeighted | Weighted Matrix |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) MergeIterator | Iterate over several ranges as if ranges have been merged |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) NNI | Interface class for nearest neighbour imputation (NNI) algorithms |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Option | Container of variables for an option |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) OptionArg | Option with argument |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) OptionFile | Class for file related options |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) OptionInFile | Class for file related options |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) OptionOutFile | Class for file related options |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) OptionHelp | Class for help option |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) OptionSwitch | Class for switch option |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) OstreamIterator | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) PCA | Principal Component Analysis |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) PriorityQueue | Multi-thread safe priority queue |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Queue | Multi-thread safe queue |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2pnode.png) Scheduler | Handle a number of jobs and send them to threads |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![|](ftv2vertline.png) ![\](ftv2lastnode.png) Job | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Segment | Class for a Segment or Interval |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) SegmentCompare | Functor using compare |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) SegmentMap | Map of Segments |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) SegmentSet | Set of Segments |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) SegmentTree | Base Class for SegmentSet and SegmentMap |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) SmartPtr | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) SmithWaterman | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) BasicStreamRedirect | Redirect a stream to another stream |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Range | A class for storing a shallow copy of a Range |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) abs | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Dereferencer | Adaptor between pointer and pointee interface |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) compose_f_gx_hy | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) compose_f_gxy | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) compose_f_gx | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) compose_f_gx_hx | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Exp | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Identity | Identity functor that returns its argument |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) get_error | Error class used in get(const std::map<Key, Tp, Compare, Alloc>& m, const Key& k) |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) less_nan | Functor that behaves like std::less with the exception that it treats NaN as a number larger than infinity |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) less_nan< DataWeight > | Specialization for DataWeight |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Log | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) pair_value_compare | Functor comparing pairs using second |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) PairFirst | Functor that return std::pair.first |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) PairSecond | Functor that return std::pair.second |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) StrideIterator | Adaptor using a stride on underlying iterator |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) SVD | Singular Value Decomposition |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) TypeInfo | Wrapper class for storing std::type_info |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) Vector | This is the yat interface to GSL vector |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) VectorBase | This is the yat interface to GSL vector |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) VectorConstView | Read-only view |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) VectorMutable | This is the mutable interface to GSL vector |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) VectorView | This is the yat interface to gsl_vector_view |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) WeightedIteratorArchetype_ctor_arg | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) WeightedIteratorArchetype | |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) WeightedIterator | WeightedIterator |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![o](ftv2node.png) WeightIterator | WeightIterator |
![](ftv2blank.png) ![](ftv2blank.png) ![](ftv2blank.png) ![\](ftv2lastnode.png) WeNNI | Weighted Nearest Neighbour Imputation |