theplu::yat::omic::GFF2 Class Reference

#include <yat/omic/GFF2.h>

Inheritance diagram for theplu::yat::omic::GFF2:

Public Member Functions
const std::string &	attribute (const std::string &key) const
const std::map< std::string, std::string > &	attributes (void) const
const std::string &	end (void) const
const std::string &	phase (void) const
const std::string &	score (void) const
const std::string &	seqid (void) const
const std::string &	source (void) const
const std::string &	start (void) const
const std::string &	strand (void) const
const std::string &	type (void) const

Protected Member Functions
const std::vector< std::string > &	vec (void) const

Related Functions
(Note that these are not member functions.)
std::ostream &	operator<< (std::ostream &os, const GFF &gff)
	output operator for GFF More...
bool	getline (std::istream &is, GFF &gff)

Detailed Description

Class for GFF2

The difference is how the values

Since

New in yat 0.8

Member Function Documentation

const std::string& theplu::yat::omic::GFF::attribute ( const std::string &  key ) const

inherited

Returns

attribute value for attribute key

If attribute with key key has several values, the values are given appended together comma-separated as it appears in file.

const std::map<std::string, std::string>& theplu::yat::omic::GFF::attributes ( void  ) const

inherited

Returns

map containing all attributes

See Also

attribute(const std::string& key) const

const std::string& theplu::yat::omic::GFF::end ( void  ) const

inherited

Returns

end string

const std::string& theplu::yat::omic::GFF::phase ( void  ) const

inherited

Returns

phase string

const std::string& theplu::yat::omic::GFF::score ( void  ) const

inherited

Returns

score string

const std::string& theplu::yat::omic::GFF::seqid ( void  ) const

inherited

Returns

seqid string

const std::string& theplu::yat::omic::GFF::source ( void  ) const

inherited

Returns

source string

const std::string& theplu::yat::omic::GFF::start ( void  ) const

inherited

Returns

start string

const std::string& theplu::yat::omic::GFF::strand ( void  ) const

inherited

Returns

strand string

const std::string& theplu::yat::omic::GFF::type ( void  ) const

inherited

Returns

type string

const std::vector<std::string>& theplu::yat::omic::GFF::vec ( void  ) const

protectedinherited

Returns

vector with the 9 elements

Friends And Related Function Documentation

bool getline ( std::istream &  is, GFF &  gff  )

related

Returns

true iff a GFF object was loaded successfully

Empty lines and lines starting with '#' are ignored.

Since

New in yat 0.8

std::ostream & operator<< ( std::ostream &  os, const GFF &  gff  )

related

output operator for GFF

Since

New in yat 0.8

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The documentation for this class was generated from the following file:

• yat/omic/GFF2.h