| ../ |
| data (svndigest:ignore) |
0 |
0 |
0 |
0 |
4114 |
peter |
| yat-hello |
115 |
45 |
44 |
26 |
4089 |
peter |
| Makefile |
22 |
2 |
13 |
7 |
2749 |
peter |
| Makefile.am |
1257 |
1052 |
107 |
98 |
4363 |
peter |
| README |
237 |
0 |
166 |
71 |
4359 |
peter |
| Suite.cc |
346 |
247 |
42 |
57 |
4359 |
peter |
| Suite.h |
1007 |
648 |
144 |
215 |
4359 |
peter |
| alignment.cc |
240 |
165 |
40 |
35 |
4359 |
peter |
| alignment2.cc |
101 |
59 |
16 |
26 |
2881 |
peter |
| anova.cc |
64 |
33 |
13 |
18 |
4114 |
peter |
| averager.cc |
895 |
767 |
54 |
74 |
4359 |
peter |
| averager1.cc |
46 |
19 |
12 |
15 |
2881 |
peter |
| averager3.cc |
54 |
25 |
12 |
17 |
2881 |
peter |
| averager4.cc |
162 |
117 |
16 |
29 |
2881 |
peter |
| bam.cc |
523 |
424 |
32 |
67 |
3999 |
peter |
| bam_header.cc |
288 |
229 |
23 |
36 |
4359 |
peter |
| bam_header2.cc |
80 |
53 |
14 |
13 |
3999 |
peter |
| bam_iterator.cc |
184 |
131 |
28 |
25 |
3999 |
peter |
| bam_multi_region_iterator.cc |
116 |
79 |
14 |
23 |
4272 |
peter |
| bam_pair.cc |
79 |
45 |
14 |
20 |
3883 |
peter |
| bam_pair_analyse.cc |
108 |
69 |
17 |
22 |
3999 |
peter |
| bam_pair_buffer.cc |
104 |
68 |
12 |
24 |
4057 |
peter |
| bam_pair_iterator.cc |
114 |
73 |
22 |
19 |
3999 |
peter |
| bam_pair_iterator2.cc |
95 |
61 |
13 |
21 |
3883 |
peter |
| bam_read_filter.cc |
86 |
56 |
14 |
16 |
3999 |
peter |
| bam_read_sequence_iterator.cc |
93 |
63 |
13 |
17 |
4345 |
peter |
| bam_region_iterator.cc |
152 |
110 |
17 |
25 |
3999 |
peter |
| binary_read_write.cc |
97 |
62 |
12 |
23 |
3910 |
peter |
| chi2.cc |
92 |
57 |
13 |
22 |
3726 |
peter |
| cholesky_decomposer.cc |
100 |
71 |
13 |
16 |
4378 |
peter |
| cigar.cc |
156 |
111 |
16 |
29 |
4207 |
peter |
| cigar2.cc |
58 |
27 |
13 |
18 |
3342 |
peter |
| cigar_iterator.cc |
116 |
75 |
19 |
22 |
3417 |
peter |
| cmd_test.sh |
37 |
9 |
17 |
11 |
4207 |
peter |
| codon.cc |
75 |
39 |
18 |
18 |
4359 |
peter |
| commandline.cc |
1032 |
892 |
40 |
100 |
4359 |
peter |
| concept.cc |
69 |
32 |
18 |
19 |
4200 |
peter |
| consensus_inputranker.cc |
258 |
184 |
39 |
35 |
4359 |
peter |
| copy_k_of_n.cc |
59 |
31 |
14 |
14 |
3454 |
peter |
| cox.cc |
163 |
95 |
31 |
37 |
4252 |
peter |
| crossvalidation.cc |
430 |
324 |
41 |
65 |
4359 |
peter |
| data_lookup_1d.cc |
314 |
240 |
37 |
37 |
4359 |
peter |
| data_weight.cc |
81 |
41 |
24 |
16 |
4359 |
peter |
| data_weight_proxy.cc |
147 |
98 |
21 |
28 |
4359 |
peter |
| defs.sh.in |
480 |
0 |
404 |
76 |
4359 |
peter |
| deleter.cc |
61 |
26 |
14 |
21 |
4089 |
peter |
| diagonal_matrix.cc |
170 |
121 |
17 |
32 |
4359 |
peter |
| distance.cc |
577 |
447 |
37 |
93 |
3550 |
peter |
| dna.cc |
154 |
107 |
14 |
33 |
2881 |
peter |
| dna_reverse_complement.cc |
72 |
40 |
15 |
17 |
3628 |
peter |
| doxygen_test.sh |
159 |
97 |
42 |
20 |
4062 |
peter |
| ensemble.cc |
282 |
209 |
38 |
35 |
4359 |
peter |
| fasta.cc |
99 |
65 |
15 |
19 |
3999 |
peter |
| feature_selection.cc |
196 |
130 |
38 |
28 |
4359 |
peter |
| fileutil.cc |
345 |
264 |
49 |
32 |
4359 |
peter |
| fisher.cc |
269 |
205 |
27 |
37 |
3743 |
peter |
| gaussian_mixture.cc |
91 |
50 |
15 |
26 |
4200 |
peter |
| gen_libmy_shared.sh |
88 |
51 |
20 |
17 |
3999 |
peter |
| gen_libmy_static.sh |
83 |
46 |
20 |
17 |
3130 |
peter |
| genomic_position.cc |
62 |
28 |
16 |
18 |
4359 |
peter |
| getline_iterator.cc |
79 |
46 |
16 |
17 |
4359 |
peter |
| getvector.cc |
103 |
71 |
15 |
17 |
3930 |
peter |
| gff.cc |
185 |
137 |
16 |
32 |
3875 |
peter |
| gsl_error_handler.cc |
54 |
27 |
13 |
14 |
3963 |
peter |
| help_test.sh |
65 |
33 |
18 |
14 |
4207 |
peter |
| histogram.cc |
99 |
59 |
18 |
22 |
4359 |
peter |
| igp.cc |
54 |
23 |
16 |
15 |
4359 |
peter |
| index.cc |
162 |
116 |
23 |
23 |
4359 |
peter |
| init.sh |
403 |
309 |
51 |
43 |
4312 |
peter |
| inputranker.cc |
157 |
97 |
34 |
26 |
4359 |
peter |
| interpolation.cc |
151 |
89 |
34 |
28 |
3966 |
peter |
| inverse_svd.cc |
133 |
89 |
14 |
30 |
4378 |
peter |
| is_sorted_until.cc |
113 |
76 |
16 |
21 |
4349 |
peter |
| iterator.cc |
1001 |
777 |
88 |
136 |
4359 |
peter |
| kalman_filter.cc |
100 |
61 |
16 |
23 |
4287 |
peter |
| kaplan_meier.cc |
123 |
77 |
13 |
33 |
4255 |
peter |
| kendall.cc |
280 |
226 |
21 |
33 |
4110 |
peter |
| kernel.cc |
586 |
460 |
52 |
74 |
4359 |
peter |
| kernel_lookup.cc |
269 |
209 |
32 |
28 |
4359 |
peter |
| kernel_matrix.cc |
65 |
33 |
13 |
19 |
3190 |
peter |
| kernel_pca.cc |
166 |
104 |
27 |
35 |
4359 |
peter |
| knn.cc |
590 |
471 |
47 |
72 |
4359 |
peter |
| kolmogorov_smirnov.cc |
335 |
266 |
21 |
48 |
3018 |
peter |
| large_file.cc |
17 |
5 |
12 |
0 |
4359 |
peter |
| libbam.cc |
52 |
28 |
14 |
10 |
3888 |
peter |
| likelihood.cc |
96 |
61 |
15 |
20 |
4378 |
peter |
| likelihood_ratio_test_binomial.cc |
59 |
27 |
13 |
19 |
3138 |
peter |
| ln_pdf.cc |
226 |
160 |
13 |
53 |
4336 |
peter |
| mAligner.cc |
165 |
122 |
14 |
29 |
4353 |
peter |
| matrix.cc |
703 |
544 |
86 |
73 |
4207 |
peter |
| matrix_expression.cc |
248 |
169 |
32 |
47 |
4207 |
peter |
| matrix_lookup.cc |
482 |
395 |
34 |
53 |
4359 |
peter |
| matrix_lookup_weighted.cc |
130 |
86 |
18 |
26 |
4359 |
peter |
| matrix_view.cc |
461 |
352 |
32 |
77 |
4378 |
peter |
| matrix_weighted.cc |
135 |
81 |
26 |
28 |
4359 |
peter |
| merge.cc |
130 |
86 |
18 |
26 |
4359 |
peter |
| merge_iterator.cc |
143 |
99 |
17 |
27 |
3417 |
peter |
| minimizer.cc |
85 |
51 |
14 |
20 |
4252 |
peter |
| msmith_waterman2.cc |
135 |
97 |
13 |
25 |
4353 |
peter |
| multiminimizer.cc |
84 |
51 |
14 |
19 |
4252 |
peter |
| multiminimizerderivative.cc |
93 |
59 |
13 |
21 |
4252 |
peter |
| multiprocess.cc |
95 |
58 |
15 |
22 |
4252 |
peter |
| multivariate.cc |
112 |
62 |
19 |
31 |
4130 |
peter |
| multivariate_gaussian.cc |
93 |
55 |
17 |
21 |
4281 |
peter |
| nbc.cc |
114 |
63 |
29 |
22 |
4359 |
peter |
| ncc.cc |
653 |
521 |
57 |
75 |
4359 |
peter |
| needleman_wunsch.cc |
74 |
40 |
13 |
21 |
4308 |
peter |
| needleman_wunsch2.cc |
54 |
25 |
14 |
15 |
4334 |
peter |
| negative_binomial.cc |
207 |
125 |
33 |
49 |
3999 |
peter |
| negative_binomial_extended_mixture.cc |
124 |
88 |
13 |
23 |
4192 |
peter |
| negative_binomial_mixture.cc |
118 |
80 |
15 |
23 |
4184 |
peter |
| nni.cc |
447 |
359 |
55 |
33 |
4359 |
peter |
| normalization.cc |
1014 |
820 |
78 |
116 |
4252 |
peter |
| ostream_iterator.cc |
67 |
37 |
13 |
17 |
3152 |
peter |
| pca.cc |
197 |
120 |
47 |
30 |
2919 |
peter |
| pca2.cc |
355 |
280 |
21 |
54 |
4370 |
peter |
| percentile_confidence_interval.cc |
117 |
86 |
13 |
18 |
4036 |
peter |
| perceptron.cc |
201 |
152 |
15 |
34 |
3709 |
peter |
| phred.cc |
53 |
23 |
13 |
17 |
3325 |
peter |
| pileup.cc |
356 |
293 |
24 |
39 |
3999 |
peter |
| poisson.cc |
164 |
115 |
18 |
31 |
3662 |
peter |
| poisson_mixture.cc |
97 |
61 |
13 |
23 |
4184 |
peter |
| print_what.cc |
86 |
55 |
13 |
18 |
3938 |
peter |
| priority_queue.cc |
118 |
79 |
15 |
24 |
3999 |
peter |
| queue.cc |
92 |
55 |
15 |
22 |
3999 |
peter |
| queue2.cc |
97 |
62 |
14 |
21 |
3999 |
peter |
| queue3.cc |
123 |
82 |
13 |
28 |
4043 |
peter |
| random_shuffle.cc |
51 |
24 |
13 |
14 |
4252 |
peter |
| random_shuffle.sh |
40 |
13 |
14 |
13 |
4252 |
peter |
| range.cc |
74 |
34 |
23 |
17 |
3330 |
peter |
| ranking.cc |
334 |
274 |
17 |
43 |
4083 |
peter |
| regression.cc |
1132 |
1007 |
51 |
74 |
4378 |
peter |
| rnd.cc |
228 |
152 |
40 |
36 |
4384 |
peter |
| rng-mt.cc |
203 |
147 |
19 |
37 |
3999 |
peter |
| roc.cc |
595 |
491 |
48 |
56 |
4359 |
peter |
| root_finder.cc |
92 |
55 |
13 |
24 |
4252 |
peter |
| root_finder_derivative.cc |
91 |
54 |
13 |
24 |
4252 |
peter |
| round.cc |
66 |
33 |
14 |
19 |
4059 |
peter |
| scheduler.cc |
103 |
64 |
19 |
20 |
3851 |
peter |
| scheduler2.cc |
99 |
54 |
21 |
24 |
3855 |
peter |
| scheduler3.cc |
101 |
60 |
18 |
23 |
4204 |
peter |
| scheduler4.cc |
86 |
53 |
13 |
20 |
3686 |
peter |
| scheduler5.cc |
88 |
54 |
13 |
21 |
3823 |
peter |
| scheduler6.cc |
80 |
46 |
14 |
20 |
3828 |
peter |
| scheduler7.cc |
91 |
53 |
15 |
23 |
3848 |
peter |
| scheduler8.cc |
101 |
64 |
15 |
22 |
4164 |
peter |
| scheduler9.cc |
88 |
52 |
16 |
20 |
4164 |
peter |
| score.cc |
375 |
299 |
38 |
38 |
4359 |
peter |
| segment.cc |
561 |
447 |
27 |
87 |
4252 |
peter |
| shuffle.cc |
45 |
19 |
15 |
11 |
4359 |
peter |
| smart_ptr.cc |
96 |
51 |
23 |
22 |
4359 |
peter |
| smith_waterman.cc |
62 |
31 |
13 |
18 |
3209 |
peter |
| smoother.cc |
67 |
36 |
16 |
15 |
3550 |
peter |
| spearman.cc |
211 |
167 |
14 |
30 |
2919 |
peter |
| split.cc |
118 |
80 |
15 |
23 |
4207 |
peter |
| statistics.cc |
618 |
485 |
60 |
73 |
4359 |
peter |
| stdopt.cc |
53 |
25 |
16 |
12 |
4207 |
peter |
| stream_redirect.cc |
156 |
110 |
18 |
28 |
4359 |
peter |
| subset_generator.cc |
547 |
445 |
36 |
66 |
4359 |
peter |
| svd.cc |
318 |
236 |
45 |
37 |
4367 |
peter |
| svm.cc |
571 |
411 |
87 |
73 |
4359 |
peter |
| svm_multi_class.cc |
176 |
128 |
17 |
31 |
4359 |
peter |
| target.cc |
192 |
141 |
32 |
19 |
4359 |
peter |
| ttest.cc |
102 |
57 |
29 |
16 |
4359 |
peter |
| tukey.cc |
99 |
63 |
17 |
19 |
3875 |
peter |
| unity_scaler.cc |
36 |
9 |
15 |
12 |
4164 |
peter |
| utility.cc |
1125 |
895 |
83 |
147 |
4359 |
peter |
| vcf.cc |
321 |
263 |
19 |
39 |
4316 |
peter |
| vcf_compare.cc |
40 |
15 |
13 |
12 |
3759 |
peter |
| vcf_file.cc |
83 |
47 |
17 |
19 |
3774 |
peter |
| vcf_file2.cc |
44 |
18 |
14 |
12 |
4252 |
peter |
| vcf_file3.cc |
42 |
17 |
13 |
12 |
4045 |
peter |
| vcf_header.cc |
114 |
79 |
16 |
19 |
4308 |
peter |
| vector.cc |
841 |
644 |
109 |
88 |
4359 |
peter |
| vector_expression.cc |
310 |
225 |
34 |
51 |
3677 |
peter |
| version.cc |
91 |
42 |
28 |
21 |
4359 |
peter |
| version_option_test.sh |
47 |
16 |
18 |
13 |
4359 |
peter |
| view.cc |
349 |
265 |
37 |
47 |
4359 |
peter |
| weighted_iterator_archetype.cc |
196 |
124 |
28 |
44 |
3579 |
peter |
| yat_ac_write_to_file_test.sh |
152 |
97 |
27 |
28 |
4326 |
peter |
| yat_am_local_test.sh |
91 |
45 |
19 |
27 |
4326 |
peter |
| yat_config_cblas_test.sh |
48 |
17 |
19 |
12 |
3114 |
peter |
| yat_config_test.sh |
88 |
48 |
19 |
21 |
3855 |
peter |
| yat_cpp_add_flag_test.sh |
106 |
66 |
21 |
19 |
3114 |
peter |
| yat_cxx_add_flag_test.sh |
87 |
49 |
21 |
17 |
3114 |
peter |
| yat_have_svn_wc_test.sh |
56 |
24 |
19 |
13 |
3999 |
peter |
| yat_header_assert_test.sh |
50 |
19 |
16 |
15 |
3855 |
peter |
| yat_ld_add_flag_test.sh |
103 |
62 |
22 |
19 |
3114 |
peter |
| yat_lt_compile_ifelse_test.sh |
67 |
27 |
22 |
18 |
3855 |
peter |
| yat_lt_link_ifelse_test.sh |
100 |
63 |
22 |
15 |
3855 |
peter |
| yat_lt_link_la_ifelse_test.sh |
211 |
157 |
16 |
38 |
3855 |
peter |
| yat_m4_test.sh |
100 |
62 |
23 |
15 |
3855 |
peter |
| yat_m4_test2.sh |
55 |
45 |
7 |
3 |
3999 |
peter |
| yat_m4_with_bam_test.sh |
57 |
29 |
17 |
11 |
3855 |
peter |
| yat_msg_error_test.sh |
89 |
46 |
25 |
18 |
3855 |
peter |
| yat_msg_error_test2.sh |
69 |
31 |
24 |
14 |
3330 |
peter |
| yat_pc_test.sh |
165 |
104 |
34 |
27 |
4019 |
peter |
| yat_prog_move_if_change_test.sh |
55 |
23 |
20 |
12 |
4359 |
peter |
| yat_revision_header_test.sh |
80 |
40 |
21 |
19 |
3855 |
peter |
| yat_svn_release_year_test.sh |
93 |
54 |
20 |
19 |
4359 |
peter |
| yat_svn_revision_test.sh |
66 |
28 |
20 |
18 |
3999 |
peter |
| yat_svn_timestamp_test.sh |
79 |
41 |
16 |
22 |
4323 |
peter |
| yat_use_libtool_tag_test.sh |
48 |
22 |
16 |
10 |
3330 |
peter |
| Total |
40849 |
28912 |
5553 |
6384 |
4384 |
peter |
![[plot]](../../../../add/images/comments/test/index.png)