| ../ |
| data (svndigest:ignore) |
0 |
0 |
0 |
0 |
4114 |
peter |
| yat-hello |
0 |
0 |
0 |
0 |
4089 |
peter |
| Makefile |
0 |
0 |
0 |
0 |
2749 |
peter |
| Makefile.am |
28 (2%) |
10 (0%) |
12 (11%) |
6 (6%) |
4363 |
peter |
| README |
0 |
0 |
0 |
0 |
4359 |
peter |
| Suite.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| Suite.h |
0 |
0 |
0 |
0 |
4359 |
peter |
| alignment.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| alignment2.cc |
0 |
0 |
0 |
0 |
2881 |
peter |
| anova.cc |
0 |
0 |
0 |
0 |
4114 |
peter |
| averager.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| averager1.cc |
0 |
0 |
0 |
0 |
2881 |
peter |
| averager3.cc |
0 |
0 |
0 |
0 |
2881 |
peter |
| averager4.cc |
0 |
0 |
0 |
0 |
2881 |
peter |
| bam.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| bam_header.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| bam_header2.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| bam_iterator.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| bam_multi_region_iterator.cc |
0 |
0 |
0 |
0 |
4272 |
peter |
| bam_pair.cc |
0 |
0 |
0 |
0 |
3883 |
peter |
| bam_pair_analyse.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| bam_pair_buffer.cc |
0 |
0 |
0 |
0 |
4057 |
peter |
| bam_pair_iterator.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| bam_pair_iterator2.cc |
0 |
0 |
0 |
0 |
3883 |
peter |
| bam_read_filter.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| bam_read_sequence_iterator.cc |
0 |
0 |
0 |
0 |
4345 |
peter |
| bam_region_iterator.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| binary_read_write.cc |
0 |
0 |
0 |
0 |
3910 |
peter |
| chi2.cc |
0 |
0 |
0 |
0 |
3726 |
peter |
| cholesky_decomposer.cc |
0 |
0 |
0 |
0 |
4378 |
peter |
| cigar.cc |
0 |
0 |
0 |
0 |
4207 |
peter |
| cigar2.cc |
0 |
0 |
0 |
0 |
3342 |
peter |
| cigar_iterator.cc |
0 |
0 |
0 |
0 |
3417 |
peter |
| cmd_test.sh |
0 |
0 |
0 |
0 |
4207 |
peter |
| codon.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| commandline.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| concept.cc |
0 |
0 |
0 |
0 |
4200 |
peter |
| consensus_inputranker.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| copy_k_of_n.cc |
0 |
0 |
0 |
0 |
3454 |
peter |
| cox.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| crossvalidation.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| data_lookup_1d.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| data_weight.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| data_weight_proxy.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| defs.sh.in |
0 |
0 |
0 |
0 |
4359 |
peter |
| deleter.cc |
0 |
0 |
0 |
0 |
4089 |
peter |
| diagonal_matrix.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| distance.cc |
0 |
0 |
0 |
0 |
3550 |
peter |
| dna.cc |
0 |
0 |
0 |
0 |
2881 |
peter |
| dna_reverse_complement.cc |
0 |
0 |
0 |
0 |
3628 |
peter |
| doxygen_test.sh |
0 |
0 |
0 |
0 |
4062 |
peter |
| ensemble.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| fasta.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| feature_selection.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| fileutil.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| fisher.cc |
0 |
0 |
0 |
0 |
3743 |
peter |
| gaussian_mixture.cc |
0 |
0 |
0 |
0 |
4200 |
peter |
| gen_libmy_shared.sh |
0 |
0 |
0 |
0 |
3999 |
peter |
| gen_libmy_static.sh |
0 |
0 |
0 |
0 |
3130 |
peter |
| genomic_position.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| getline_iterator.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| getvector.cc |
0 |
0 |
0 |
0 |
3930 |
peter |
| gff.cc |
0 |
0 |
0 |
0 |
3875 |
peter |
| gsl_error_handler.cc |
0 |
0 |
0 |
0 |
3963 |
peter |
| help_test.sh |
0 |
0 |
0 |
0 |
4207 |
peter |
| histogram.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| igp.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| index.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| init.sh |
0 |
0 |
0 |
0 |
4312 |
peter |
| inputranker.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| interpolation.cc |
0 |
0 |
0 |
0 |
3966 |
peter |
| inverse_svd.cc |
0 |
0 |
0 |
0 |
4378 |
peter |
| is_sorted_until.cc |
0 |
0 |
0 |
0 |
4349 |
peter |
| iterator.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| kalman_filter.cc |
0 |
0 |
0 |
0 |
4287 |
peter |
| kaplan_meier.cc |
0 |
0 |
0 |
0 |
4255 |
peter |
| kendall.cc |
0 |
0 |
0 |
0 |
4110 |
peter |
| kernel.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| kernel_lookup.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| kernel_matrix.cc |
0 |
0 |
0 |
0 |
3190 |
peter |
| kernel_pca.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| knn.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| kolmogorov_smirnov.cc |
0 |
0 |
0 |
0 |
3018 |
peter |
| large_file.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| libbam.cc |
0 |
0 |
0 |
0 |
3888 |
peter |
| likelihood.cc |
0 |
0 |
0 |
0 |
4378 |
peter |
| likelihood_ratio_test_binomial.cc |
0 |
0 |
0 |
0 |
3138 |
peter |
| ln_pdf.cc |
0 |
0 |
0 |
0 |
4336 |
peter |
| mAligner.cc |
0 |
0 |
0 |
0 |
4353 |
peter |
| matrix.cc |
0 |
0 |
0 |
0 |
4207 |
peter |
| matrix_expression.cc |
0 |
0 |
0 |
0 |
4207 |
peter |
| matrix_lookup.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| matrix_lookup_weighted.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| matrix_view.cc |
0 |
0 |
0 |
0 |
4378 |
peter |
| matrix_weighted.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| merge.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| merge_iterator.cc |
0 |
0 |
0 |
0 |
3417 |
peter |
| minimizer.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| msmith_waterman2.cc |
0 |
0 |
0 |
0 |
4353 |
peter |
| multiminimizer.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| multiminimizerderivative.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| multiprocess.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| multivariate.cc |
0 |
0 |
0 |
0 |
4130 |
peter |
| multivariate_gaussian.cc |
0 |
0 |
0 |
0 |
4281 |
peter |
| nbc.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| ncc.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| needleman_wunsch.cc |
0 |
0 |
0 |
0 |
4308 |
peter |
| needleman_wunsch2.cc |
0 |
0 |
0 |
0 |
4334 |
peter |
| negative_binomial.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| negative_binomial_extended_mixture.cc |
0 |
0 |
0 |
0 |
4192 |
peter |
| negative_binomial_mixture.cc |
0 |
0 |
0 |
0 |
4184 |
peter |
| nni.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| normalization.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| ostream_iterator.cc |
0 |
0 |
0 |
0 |
3152 |
peter |
| pca.cc |
115 (58%) |
80 (66%) |
15 (31%) |
20 (66%) |
2919 |
peter |
| pca2.cc |
0 |
0 |
0 |
0 |
4370 |
peter |
| percentile_confidence_interval.cc |
0 |
0 |
0 |
0 |
4036 |
peter |
| perceptron.cc |
0 |
0 |
0 |
0 |
3709 |
peter |
| phred.cc |
0 |
0 |
0 |
0 |
3325 |
peter |
| pileup.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| poisson.cc |
0 |
0 |
0 |
0 |
3662 |
peter |
| poisson_mixture.cc |
0 |
0 |
0 |
0 |
4184 |
peter |
| print_what.cc |
0 |
0 |
0 |
0 |
3938 |
peter |
| priority_queue.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| queue.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| queue2.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| queue3.cc |
0 |
0 |
0 |
0 |
4043 |
peter |
| random_shuffle.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| random_shuffle.sh |
0 |
0 |
0 |
0 |
4252 |
peter |
| range.cc |
0 |
0 |
0 |
0 |
3330 |
peter |
| ranking.cc |
0 |
0 |
0 |
0 |
4083 |
peter |
| regression.cc |
0 |
0 |
0 |
0 |
4378 |
peter |
| rnd.cc |
39 (17%) |
29 (19%) |
0 |
10 (27%) |
4384 |
peter |
| rng-mt.cc |
0 |
0 |
0 |
0 |
3999 |
peter |
| roc.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| root_finder.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| root_finder_derivative.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| round.cc |
0 |
0 |
0 |
0 |
4059 |
peter |
| scheduler.cc |
0 |
0 |
0 |
0 |
3851 |
peter |
| scheduler2.cc |
0 |
0 |
0 |
0 |
3855 |
peter |
| scheduler3.cc |
0 |
0 |
0 |
0 |
4204 |
peter |
| scheduler4.cc |
0 |
0 |
0 |
0 |
3686 |
peter |
| scheduler5.cc |
0 |
0 |
0 |
0 |
3823 |
peter |
| scheduler6.cc |
0 |
0 |
0 |
0 |
3828 |
peter |
| scheduler7.cc |
0 |
0 |
0 |
0 |
3848 |
peter |
| scheduler8.cc |
0 |
0 |
0 |
0 |
4164 |
peter |
| scheduler9.cc |
0 |
0 |
0 |
0 |
4164 |
peter |
| score.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| segment.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| shuffle.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| smart_ptr.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| smith_waterman.cc |
0 |
0 |
0 |
0 |
3209 |
peter |
| smoother.cc |
0 |
0 |
0 |
0 |
3550 |
peter |
| spearman.cc |
0 |
0 |
0 |
0 |
2919 |
peter |
| split.cc |
0 |
0 |
0 |
0 |
4207 |
peter |
| statistics.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| stdopt.cc |
0 |
0 |
0 |
0 |
4207 |
peter |
| stream_redirect.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| subset_generator.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| svd.cc |
13 (4%) |
8 (3%) |
2 (4%) |
3 (8%) |
4367 |
peter |
| svm.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| svm_multi_class.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| target.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| ttest.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| tukey.cc |
0 |
0 |
0 |
0 |
3875 |
peter |
| unity_scaler.cc |
0 |
0 |
0 |
0 |
4164 |
peter |
| utility.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| vcf.cc |
0 |
0 |
0 |
0 |
4316 |
peter |
| vcf_compare.cc |
0 |
0 |
0 |
0 |
3759 |
peter |
| vcf_file.cc |
0 |
0 |
0 |
0 |
3774 |
peter |
| vcf_file2.cc |
0 |
0 |
0 |
0 |
4252 |
peter |
| vcf_file3.cc |
0 |
0 |
0 |
0 |
4045 |
peter |
| vcf_header.cc |
0 |
0 |
0 |
0 |
4308 |
peter |
| vector.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| vector_expression.cc |
0 |
0 |
0 |
0 |
3677 |
peter |
| version.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| version_option_test.sh |
0 |
0 |
0 |
0 |
4359 |
peter |
| view.cc |
0 |
0 |
0 |
0 |
4359 |
peter |
| weighted_iterator_archetype.cc |
0 |
0 |
0 |
0 |
3579 |
peter |
| yat_ac_write_to_file_test.sh |
0 |
0 |
0 |
0 |
4326 |
peter |
| yat_am_local_test.sh |
0 |
0 |
0 |
0 |
4326 |
peter |
| yat_config_cblas_test.sh |
0 |
0 |
0 |
0 |
3114 |
peter |
| yat_config_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_cpp_add_flag_test.sh |
0 |
0 |
0 |
0 |
3114 |
peter |
| yat_cxx_add_flag_test.sh |
0 |
0 |
0 |
0 |
3114 |
peter |
| yat_have_svn_wc_test.sh |
0 |
0 |
0 |
0 |
3999 |
peter |
| yat_header_assert_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_ld_add_flag_test.sh |
0 |
0 |
0 |
0 |
3114 |
peter |
| yat_lt_compile_ifelse_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_lt_link_ifelse_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_lt_link_la_ifelse_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_m4_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_m4_test2.sh |
0 |
0 |
0 |
0 |
3999 |
peter |
| yat_m4_with_bam_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_msg_error_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_msg_error_test2.sh |
0 |
0 |
0 |
0 |
3330 |
peter |
| yat_pc_test.sh |
0 |
0 |
0 |
0 |
4019 |
peter |
| yat_prog_move_if_change_test.sh |
0 |
0 |
0 |
0 |
4359 |
peter |
| yat_revision_header_test.sh |
0 |
0 |
0 |
0 |
3855 |
peter |
| yat_svn_release_year_test.sh |
0 |
0 |
0 |
0 |
4359 |
peter |
| yat_svn_revision_test.sh |
0 |
0 |
0 |
0 |
3999 |
peter |
| yat_svn_timestamp_test.sh |
0 |
0 |
0 |
0 |
4323 |
peter |
| yat_use_libtool_tag_test.sh |
0 |
0 |
0 |
0 |
3330 |
peter |
| Total |
195 (0%) |
127 (0%) |
29 (0%) |
39 (0%) |
4384 |
peter |
![[plot]](../../../../add/images/code/test/index.png)