- s -

• s() : theplu::yat::utility::SVD
• s2() : theplu::yat::regression::Linear , theplu::yat::regression::MultiDimensionalWeighted , theplu::yat::regression::OneDimensionalWeighted , theplu::yat::regression::Polynomial , theplu::yat::regression::Naive , theplu::yat::regression::PolynomialWeighted , theplu::yat::regression::LinearWeighted , theplu::yat::regression::NaiveWeighted , theplu::yat::regression::OneDimensional
• same_query_name() : theplu::yat::omic::BamRead
• Sampler() : theplu::yat::classifier::Sampler
• SAMScore() : theplu::yat::statistics::SAMScore
• Scheduler() : theplu::yat::utility::Scheduler
• score() : theplu::yat::classifier::InputRanker , theplu::yat::statistics::SAMScore , theplu::yat::omic::GFF , theplu::yat::statistics::Score , theplu::yat::statistics::AUC , theplu::yat::statistics::Score , theplu::yat::statistics::AUC , theplu::yat::statistics::Score , theplu::yat::statistics::SNRScore , theplu::yat::statistics::AUC , theplu::yat::statistics::SNRScore , theplu::yat::statistics::FoldChange , theplu::yat::statistics::Spearman , theplu::yat::statistics::tScore , theplu::yat::statistics::FoldChange , theplu::yat::statistics::tScore , theplu::yat::statistics::FoldChange , theplu::yat::statistics::tScore , theplu::yat::statistics::Kendall , theplu::yat::statistics::tScore , theplu::yat::statistics::KolmogorovSmirnov , theplu::yat::statistics::tTest , theplu::yat::statistics::WilcoxonFoldChange , theplu::yat::statistics::KolmogorovSmirnovOneSample , theplu::yat::statistics::WilcoxonFoldChange , theplu::yat::utility::SmithWaterman , theplu::yat::statistics::Pearson
• Score() : theplu::yat::statistics::Score
• score() : theplu::yat::statistics::Pearson , theplu::yat::classifier::IGP< Distance > , theplu::yat::statistics::PearsonCorrelation , theplu::yat::statistics::SAMScore
• second() : theplu::yat::omic::BamPair , theplu::yat::omic::BamPairProxy
• seed() : theplu::yat::random::RNG , theplu::yat::random::Discrete , theplu::yat::random::Continuous
• seed_from_devurandom() : theplu::yat::random::RNG , theplu::yat::random::Discrete , theplu::yat::random::Continuous
• Segment() : theplu::yat::utility::Segment< T, Compare >
• SegmentMap() : theplu::yat::utility::SegmentMap< T, Tp, Compare >
• SegmentSet() : theplu::yat::utility::SegmentSet< T, Compare >
• SegmentTree() : theplu::yat::utility::SegmentTree< Container, Compare, Value2Key >
• selected() : theplu::yat::classifier::KernelLookup
• seqid() : theplu::yat::omic::GFF
• sequence() : theplu::yat::omic::BamRead , theplu::yat::omic::Fasta , theplu::yat::omic::Pileup< Iterator >::Entry
• sequence_length() : theplu::yat::omic::BamRead , theplu::yat::omic::Fasta
• sequence_str() : theplu::yat::omic::BamRead
• set_binary() : theplu::yat::classifier::Target
• set_C() : theplu::yat::classifier::SVM , theplu::yat::classifier::SvmMultiClass
• set_column() : theplu::yat::utility::ColumnStream
• set_state() : theplu::yat::random::RNG
• short_name() : theplu::yat::utility::Option
• shuffle() : theplu::yat::classifier::SVindex , theplu::yat::statistics::KolmogorovSmirnov
• signed_score() : theplu::yat::statistics::KolmogorovSmirnov , theplu::yat::statistics::KolmogorovSmirnovOneSample
• size() : theplu::yat::utility::SegmentTree< Container, Compare, Value2Key > , theplu::yat::classifier::DataLookup1D , theplu::yat::classifier::DataLookupWeighted1D , theplu::yat::classifier::EnsembleBuilder< Classifier, Data > , theplu::yat::utility::Aligner::Cigar , theplu::yat::classifier::Kernel , theplu::yat::classifier::SVindex , theplu::yat::classifier::Sampler , theplu::yat::classifier::SubsetGenerator< Data > , theplu::yat::classifier::Target , theplu::yat::omic::Fasta::Sequence , theplu::yat::statistics::LikelihoodRatioTestBinomial , theplu::yat::utility::Index , theplu::yat::utility::PriorityQueue< T, Compare > , theplu::yat::utility::Queue< T > , theplu::yat::utility::VectorBase
• skewness() : theplu::yat::statistics::averager_base3< Derived >
• skip_ref() : theplu::yat::omic::Pileup< Iterator >
• SmartPtr() : theplu::yat::utility::SmartPtr< T >
• smith_waterman() : theplu::yat::utility::Aligner
• SmithWaterman() : theplu::yat::utility::SmithWaterman
• Smoother() : theplu::yat::statistics::Smoother
• SNRScore() : theplu::yat::statistics::SNRScore
• soft_clipped() : theplu::yat::omic::BamRead
• solve() : theplu::yat::utility::SVD
• sort() : theplu::yat::utility::CommandLine
• sort_index() : theplu::yat::utility::VectorBase
• sort_largest_index() : theplu::yat::utility::VectorBase
• sort_smallest_index() : theplu::yat::utility::VectorBase
• source() : theplu::yat::omic::GFF
• spacing() : theplu::yat::statistics::Histogram
• Spearman() : theplu::yat::normalizer::Spearman , theplu::yat::statistics::Spearman
• standard_error() : theplu::yat::statistics::averager_base2< Derived > , theplu::yat::statistics::AveragerWeighted
• standard_error2() : theplu::yat::regression::Linear , theplu::yat::regression::LinearWeighted , theplu::yat::regression::MultiDimensional , theplu::yat::regression::Naive , theplu::yat::regression::OneDimensional , theplu::yat::regression::Polynomial , theplu::yat::regression::OneDimensionalWeighted , theplu::yat::regression::MultiDimensionalWeighted , theplu::yat::regression::PolynomialWeighted , theplu::yat::regression::NaiveWeighted
• start() : theplu::yat::omic::GFF , theplu::yat::omic::Codon
• std() : theplu::yat::statistics::averager_base2< Derived > , theplu::yat::statistics::AveragerWeighted
• stop() : theplu::yat::omic::Codon
• strand() : theplu::yat::omic::GFF
• stride() : theplu::yat::utility::StrideIterator< RandomAccessIterator >
• StrideIterator() : theplu::yat::utility::StrideIterator< RandomAccessIterator >
• submit() : theplu::yat::utility::Scheduler
• SubsetGenerator() : theplu::yat::classifier::SubsetGenerator< Data >
• sum() : theplu::yat::utility::VectorBase
• sum_squared_deviation() : theplu::yat::statistics::AveragerPair
• sum_w() : theplu::yat::statistics::AveragerPairWeighted , theplu::yat::statistics::AveragerWeighted
• sum_weight() : theplu::yat::classifier::DataLookupWeighted1D
• sum_ww() : theplu::yat::statistics::AveragerWeighted
• sum_wx() : theplu::yat::statistics::AveragerWeighted
• sum_wxx() : theplu::yat::statistics::AveragerWeighted
• sum_x() : theplu::yat::statistics::averager_base< Derived >
• sum_x3_centered() : theplu::yat::statistics::averager_base3< Derived >
• sum_x4_centered() : theplu::yat::statistics::averager_base4< Derived >
• sum_xx() : theplu::yat::statistics::averager_base2< Derived >
• sum_xx_centered() : theplu::yat::statistics::AveragerWeighted , theplu::yat::statistics::averager_base2< Derived >
• sum_xy() : theplu::yat::statistics::AveragerPairWeighted , theplu::yat::statistics::AveragerPair
• sum_xy_centered() : theplu::yat::statistics::AveragerPair , theplu::yat::statistics::AveragerPairWeighted
• SupervisedClassifier() : theplu::yat::classifier::SupervisedClassifier
• sv_first() : theplu::yat::classifier::SVindex
• sv_second() : theplu::yat::classifier::SVindex
• SVD() : theplu::yat::utility::SVD
• SVindex() : theplu::yat::classifier::SVindex
• SVM() : theplu::yat::classifier::SVM
• SvmMultiClass() : theplu::yat::classifier::SvmMultiClass
• swap() : theplu::yat::utility::MatrixWeighted , theplu::yat::utility::Vector , theplu::yat::omic::BamHeader , theplu::yat::omic::BamRead , theplu::yat::utility::VectorMutable , theplu::yat::utility::MatrixWeighted , theplu::yat::omic::BamRead , theplu::yat::omic::BamHeader , theplu::yat::utility::Matrix
• swap_columns() : theplu::yat::utility::Matrix
• swap_rowcol() : theplu::yat::utility::Matrix
• swap_rows() : theplu::yat::utility::Matrix
• synopsis() : theplu::yat::utility::OptionHelp